Re: [Debian-med-packaging] Bug#1062404: orthanc-python: flaky autopkgtest: Test failed with

2024-03-30 Thread Sébastien Jodogne
Hello again, On 3/30/24 15:04, Nilesh Patra wrote: I have just uploaded it: https://salsa.debian.org/med-team/orthanc-python/-/commit/3cdc765442ab3fce9148c33ba865467983b11e0b Actually, the patch was more of a local workaround based on your system configuration and should stay the way it was fo

Re: [Debian-med-packaging] Bug#1062404: orthanc-python: flaky autopkgtest: Test failed with

2024-03-30 Thread Sébastien Jodogne
Now, the next problem is: The test always succeeds on my standard amd64 architecture. Despite many attempts, I am totally unable to reproduce #1062404. @Paul: How could I reproduce the issue? @Nilesh: Shouldn't this test simply be disabled? OK, I think I have finally found the culprit. T

Re: [Debian-med-packaging] Bug#1062404: orthanc-python: flaky autopkgtest: Test failed with

2024-03-30 Thread Sébastien Jodogne
Hi Nilesh, For some reason, this is not taking needs-sudo restriction well. Can you try once with this patch (no need to re-compile) and let me know if that helps? diff --git a/debian/tests/control b/debian/tests/control index 5e8c44d..4f9b12a 100644 --- a/debian/tests/control +++ b/debian/tes

Re: [Debian-med-packaging] Bug#1062404: orthanc-python: flaky autopkgtest: Test failed with

2024-03-30 Thread Sébastien Jodogne
Dear Nilesh, Thanks for your so fast support! On 3/30/24 12:41, Nilesh Patra wrote: Once compilation is done, how can I execute autopkgtest? I have tried multiple variations, including the most basic: $ sudo autopkgtest . -- null $ sudo autopkgtest ../build-area/orthanc-python_4.1+ds-2_amd64.c

Re: [Debian-med-packaging] Bug#1062404: orthanc-python: flaky autopkgtest: Test failed with

2024-03-30 Thread Sébastien Jodogne
Hello, On 2/1/24 17:36, Nilesh Patra wrote: On Thu, Feb 01, 2024 at 01:55:21PM +0100, Sébastien Jodogne wrote: Even if I'm tagged as the maintainer of "orthanc-python", I don't know how autopkgtest/flaky works (I haven't implemented such tests by myself). This is

Re: Bug#1060104: dcmtk: FTBFS on armel: Error: bad immediate value for offset (4100)

2024-03-19 Thread Sébastien Jodogne
Dear Emmanuele and Mathieu, On 3/19/24 08:51, Mathieu Malaterre wrote: On Tue, Mar 19, 2024 at 8:44 AM Emanuele Rocca wrote: Hi, On 2024-03-19 06:24, Sébastien Jodogne wrote: Because of bug #1060104, a large majority of the packages related to medical imaging have just disappeared from

Re: Bug#1060104: dcmtk: FTBFS on armel: Error: bad immediate value for offset (4100)

2024-03-18 Thread Sébastien Jodogne
Dear all, Because of bug #1060104, a large majority of the packages related to medical imaging have just disappeared from Debian Unstable. But, if I correctly understand #1060104, it is specific to one single platform (armel). My question is: Rather than penalizing all platforms (including the

Re: Bug#1060104: dcmtk: FTBFS on armel: Error: bad immediate value for offset (4100)

2024-03-18 Thread Sébastien Jodogne
Dear all, Because of bug #1060104, a large majority of the packages related to medical imaging have just disappeared from Debian Unstable. But, if I correctly understand #1060104, it is specific to one single platform (armel). My question is: Rather than penalizing all platforms (including

Re: [Debian-med-packaging] Bug#1062404: orthanc-python: flaky autopkgtest: Test failed with

2024-02-01 Thread Sébastien Jodogne
Hello, Even if I'm tagged as the maintainer of "orthanc-python", I don't know how autopkgtest/flaky works (I haven't implemented such tests by myself). I consequently forward your message to the Debian Med mailing list, as I cannot help on this bug by myself. Regards, Sébastien- > I looked at th

Re: Adding autopkgtest to Orthanc-python

2023-11-07 Thread Sébastien Jodogne
Hello, On 11/4/23 11:53, Nilesh Patra wrote: I see -- but this seems a little counter-intuitive, no? orthanc-python installs files in /etc/orthanc/ but by what you said above the plugins should be installed only in /usr/share/orthanc/plugins/ to be working (along with a bunch of .so files) - is

Re: Adding autopkgtest to Orthanc-python

2023-11-04 Thread Sébastien Jodogne
Hello, I tried doing something similar however the test still seems to fail. The failing job can be found at[3]. [3] https://salsa.debian.org/med-team/orthanc-python/-/jobs/4887512 The log file of Orthanc indicates that the Python plugin is simply not loaded: > I1104 10:12:22.947781 Plu

Re: Adding autopkgtest to Orthanc-python

2023-10-31 Thread Sébastien Jodogne
Dear all, This error indicates that two instances of Orthanc are running at the same time, most probably because the "orthanc" Debian service is not stopped at the beginning of the test by autopkgtests. I indeed do not see any call to "systemctl stop orthanc" in the main script "debian/tests

Re: Orthanc Integration Test using Orthanc-wsi

2023-10-31 Thread Sébastien Jodogne
Dear Israel, Thanks for your work on this. Please however could you explain me how to execute autopkgtests on my development Debian, without having to recompile the package from scratch everytime I try to modify the "debian/test/*" files? I have strictly no experience with autopkgtests, and

Re: Bug filled against an old version of a package

2023-08-18 Thread Sébastien Jodogne
Dear Joost, On 18/08/23 17:27, Joost van Baal-Ilić wrote: On Fri, Aug 18, 2023 at 04:35:27PM +0200, Sébastien Jodogne wrote: [...] Please could someone indicate me what I should do in such a situation? Thanks for any advice! Just send this explanation to 1041116-cl...@bugs.debian.org. Adding

Bug filled against an old version of a package

2023-08-18 Thread Sébastien Jodogne
Dear all, I have a question regarding the issue #1041116 that is currently opened against the "orthanc-postgresql" package: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1041116 This bug is filed against the version of the "orthanc-postgresql" package version that corresponds the "stable"

Re: Fwd: civetweb_1.15+dfsg-5_source.changes REJECTED

2023-07-16 Thread Sébastien Jodogne
Dear Andreas, For whatever reason the pristine-tar information does not match the upstream source tarball. My way to solve it is to re-import the tarball I get via apt source civetweb Thanks, that worked! But indeed, it is not relevant anymore since your update to civetweb 1.16 :-)

Re: Fwd: civetweb_1.15+dfsg-5_source.changes REJECTED

2023-07-16 Thread Sébastien Jodogne
Deal Nilesh, Thanks for your help! On 15/07/23 17:35, Nilesh Patra wrote: On Sat, Jul 15, 2023 at 01:46:57PM +0200, Sébastien Jodogne wrote: On another topic, it looks like I've been kicked off the "debian-med-packaging" mailing list, and I'm unable to register b

Fwd: civetweb_1.15+dfsg-5_source.changes REJECTED

2023-07-15 Thread Sébastien Jodogne
Dear all, I've tried to fix issue #1037603 in the civetweb package: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1037603 Unfortunately, my upload has failed with the log below. Please could you explain me what I should do when facing such a situation? Thanks in advance! On another topic

Re: Latest version of orthanc fails

2023-02-06 Thread Sébastien Jodogne
> I did not upgrade, just pushed to Git to prepare for future > uploads. I will not upload any orthan* package without your > confirmation. Great! Be sure that as soon as a new suitable is available, I'll take care of the upload. Sébastien-

Re: Latest version of orthanc fails

2023-02-06 Thread Sébastien Jodogne
Hi Andreas, On Mon, 6 Feb 2023 at 08:58, Andreas Tille wrote: > > Hi Sébastian, > > I injected the latest version of orthanc into Git but got > > CMake Error at cmake_install.cmake:96 (file): > file INSTALL cannot find > "/build/orthanc-1.11.2+dfsg/BuildServer/libDelayedDeletion.so": No such

Re: Uscan error for orthanc-wsi

2023-01-19 Thread Sébastien Jodogne
Hi Andreas, On 19/01/23 14:25, Andreas Tille wrote: Hi Sébastien, Am Thu, Jan 19, 2023 at 02:06:30PM +0100 schrieb Sébastien Jodogne: I'm trying to get in touch with them. If no solution can be found in a reasonable amount of time, I'll migrate the downloads onto the servers of my

Re: Uscan error for orthanc-wsi

2023-01-19 Thread Sébastien Jodogne
ww.orthanc-server.com/browse.php?path=/whole-slide-imaging which simply returns Unable to create the table: Could you fix this please? Kind regards Andreas. -- Sébastien Jodogne Web: https://info.ucl.ac.be/~sjodogne/ Twitter: https://twitter.com/sjodogne

Re: Command line switches for aeskulap

2022-11-12 Thread Sébastien Jodogne
Hello, I'm the leader of the Orthanc project that was mentioned by Karsten. Orthanc comes with the "Stone Web viewer" plugin that provides a free and open-source radiology viewer with features similar to those of aeskulap: https://www.orthanc-server.com/static.php?page=stone-web-viewer You co

Re: Acquiring Dental RVG on Linux

2022-10-12 Thread Sébastien Jodogne
On 12/10/22 14:22, Karsten Hilbert wrote: Am Wed, Oct 12, 2022 at 09:08:47AM -0300 schrieb Leonardo M. Ramé: Good news!, Horos shows the image exactly as the software from Carestream. Now it's a matter of looking at their source code. Ha ! Now *that* is interesting. I am pretty curious as

GNUHealthCon and OrthancCon

2022-08-26 Thread Sébastien Jodogne
e=orthanc-con-2022 Both conferences are free events, and have an open call for abstracts: Feel free to contribute! Kind Regards, Sébastien- -- Sébastien Jodogne Web: https://www.info.ucl.ac.be/~sjodogne/ Twitter: https://twitter.com/sjodogne

Re: Neuroimaging plugin for Orthanc

2022-04-27 Thread Sébastien Jodogne
Hi Étienne, On 27/04/22 19:55, Étienne Mollier wrote: All good to me, you can adjust the d/changelog to target either "unstable" or "experimental" at your convenience, instead of "UNRELEASED", and it will be ready for upload. Great! I have adjusted d/changelog for upload: https://salsa.debian.

Re: Neuroimaging plugin for Orthanc

2022-04-27 Thread Sébastien Jodogne
e the upload. Regards, Sébastien- On 26/04/22 21:41, Étienne Mollier wrote: Hi Sébastien, Sébastien Jodogne, on 2022-04-26: I've just created a new package that brings support for neuroimaging in Orthanc (DICOM-to-NIfTI conversion, similarly to dcm2niix): https://salsa.debian.org/med-team/ort

Neuroimaging plugin for Orthanc

2022-04-26 Thread Sébastien Jodogne
Dear all, I've just created a new package that brings support for neuroimaging in Orthanc (DICOM-to-NIfTI conversion, similarly to dcm2niix): https://salsa.debian.org/med-team/orthanc-neuro/ Would it be possible for a Debian developer to review this package, and possibly upload it to NEW? Man

Re: Fwd: [Debian-med-packaging] Bug#1003314: orthanc package: startlimitburst too low

2022-01-14 Thread Sébastien Jodogne
. Regards, Sébastien- On 14/01/22 14:04, Aaron M. Ucko wrote: Sébastien Jodogne writes: Please could someone indicate how I can modify such a postinst script so as Orthanc is only restarted once if multiple Orthanc plugins are installed/upgraded at once? Please try using dpkg's tr

Fwd: [Debian-med-packaging] Bug#1003314: orthanc package: startlimitburst too low

2022-01-13 Thread Sébastien Jodogne
Dear all, I take the liberty of forwarding this issue to the main Debian Med list, as I am unsure about the proper way of solving it. All the Orthanc plugins now contain a postinst script that is similar to the following one: https://salsa.debian.org/med-team/orthanc-webviewer/-/blob/debian/

Re: Static linking without using a Built-Using attribute

2021-06-08 Thread Sébastien Jodogne
Dear Nilesh, > Etienne filed unblock request for orthanc: > https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=989504 > > *However*, you will also have to do it for orthanc-webviewer, > orthanc-wsi, orthanc-dicomweb -- 3 separate unblock requests. > > They are packages without autopkgtests, and n

Re: Static linking without using a Built-Using attribute

2021-06-05 Thread Sébastien Jodogne
> Thanks Nilesh for the permissions, I begun with upload of > orthanc 1.9.2+really1.9.1+dfsg-1 source changes. Sébastien, I > let you proceed with the plugins, since you seemed willing to do > it yourself. Great! Just an additional question: In your previous message, you mentioned the need to fi

Re: Static linking without using a Built-Using attribute

2021-06-05 Thread Sébastien Jodogne
t; > Étienne Mollier, on 2021-06-04: >> Sébastien Jodogne, on 2021-06-04: >>> In practice, should I first sync my git repository with the tag >>> "orthanc-1.9.2+dfsg-1", do the modifications and upload to unstable, >>> then merge back my modifications in th

Re: Static linking without using a Built-Using attribute

2021-06-04 Thread Sébastien Jodogne
Dear Nilesh, Thank you very much for your help! On 4/06/21 11:45, Nilesh Patra wrote: > Hi Sébastien > > On Fri, 4 Jun, 2021, 2:15 pm Sébastien Jodogne, > mailto:s.jodo...@orthanc-labs.com>> wrote: > > > Adrian (Bunk) replied that "This i

Static linking without using a Built-Using attribute

2021-06-04 Thread Sébastien Jodogne
Dear all, This message is about the three following related bugs in the packages of the Orthanc family: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=989126 (orthanc-wsi) https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=989127 (orthanc-webviewer) https://bugs.debian.org/cgi-bin/bugreport.cgi

Re: [Debian-med-packaging] Bug#973612: I'm afrait I did some kind of sabotage by upgrading civetweb ... [karsten.hilb...@gmx.net: Bug#973612: orthanc: libcivetweb version mismatch]

2020-11-03 Thread Sébastien Jodogne
I wanted to share them if someone else meets a similar problem in another context. Best Regards, Sébastien- [1] https://salsa.debian.org/med-team/civetweb/-/commit/ccb62139b6139ea6efc2432c12018de6e3c16003 On 3/11/20 14:11, Andreas Tille wrote: > [including the list again] > Hi Sébastien, > >

Source upload of orthanc-gdcm

2020-11-01 Thread Sébastien Jodogne
Hello, The NEW package "orthanc-gdcm" was accepted into unstable two days ago. However, it looks like I don't have the permission to do a source upload for this package [1]. What can I do to gain this permission? Thanks in advance! Kind Regards, Sébastien- [1] https://alioth-lists.debian.net/p

Fix of orthanc-gdcm

2020-10-17 Thread Sébastien Jodogne
Dear all, This is a follow-up to the rejection of the NEW package "orthanc-gdcm" in July 2020 [1]. As the packages "liborthancframework*" were accepted in unstable yesterday, I have been able to refactor the "orthanc-gdcm" so that it doesn't depend on the source code of Orthanc anymore. The resul

Re: Rejection of Orthanc

2020-09-15 Thread Sébastien Jodogne
Hello again, >>> May be we can even push orthanc to new *after* civetweb and I explicitly >>> hint ftpmaster about the needed sequence to accept both. >> >> Yes, if you wish, I can prepare a "orthanc-1.7.3+dfsg-3" that links >> against the "civetweb" package, and that simultaneously re-enables the

Re: Rejection of Orthanc

2020-09-15 Thread Sébastien Jodogne
Hello, > Argh, I forgot git pull before running dput - hope my dcut will be right > in time to fix this without ftpmaster interaction. Thanks a lot for > watching me in this respect in any case! Great: I see that civetweb_1.12+dfsg-1 has just been put into the NEW queue. >> As soon as the "cive

Re: Rejection of Orthanc

2020-09-15 Thread Sébastien Jodogne
Hello, >> One could also consider building the C++ library by setting >> "-CIVETWEB_ENABLE_CXX=ON", which produces the "libcivetweb-cpp.(a|so)" >> C++ library together with the "libcivetweb.(a|so)" C library. Note >> however that the C++ library is not used by Orthanc. >> [...] > > I think we sho

Re: Rejection of Orthanc

2020-09-14 Thread Sébastien Jodogne
Hi Andreas, > I agree but need to work on this package structure. May be I also > check hor to provide a .a static lib for the -dev package. I had a look at the CMake stuff, and it visibly doesn't allow the simultaneous generation of the .so shared lib together with the .a static lib. As a cons

Re: Rejection of Orthanc

2020-09-14 Thread Sébastien Jodogne
> It somehow smells like an attempt to access some remote location. Given > that you have somehow build this before in a restricted chroot is there > any trick I can prevent this? I confirm that the CMake of civetweb by default requires access to Internet. After some testing, here is the proper

Re: Rejection of Orthanc

2020-09-14 Thread Sébastien Jodogne
Dear Andreas, >> Is there anyone willing to provide help? > > I injected basically what our package_template creates to > > https://salsa.debian.org/med-team/civetweb > > It is by no means a functional packaging yet. Thanks so much for your support and for taking this issue into considerat

Rejection of Orthanc

2020-09-14 Thread Sébastien Jodogne
e willing to provide help? Otherwise, I fear I'll have to orphan all this 8-year-long work on Orthanc. I thank you in advance, Sébastien- Forwarded Message Subject:Re: [Debian-med-packaging] orthanc_1.7.2+dfsg-2_amd64.changes REJECTED Date: Sun, 13 Sep 2020 19:28:29 +0200

Re: Orthanc and all its plugins are getting removed from testing

2020-08-10 Thread Sébastien Jodogne
As suggested by Andreas, I've been in touch with the FTP team. Following this discussion, I've uploaded orthanc-1.7.2+dfsg-3 to unstable, that doesn't contain the NEW changes. For reference, here are the two changesets to revert once "liborthancframework-dev" and "liborthancframework1" subpac

Orthanc and all its plugins are getting removed from testing

2020-08-09 Thread Sébastien Jodogne
Dear all, Because of the bug #966655 [1], and because of the fact that orthanc-1.7.2+dfsg-2 is pending in the NEW queue [2], I cannot commit the fix regarding the missing build dependency on tzdata until the NEW packages get accepted. But, as #966655 is tagged as serious, the entire Orthanc ecosy

Re: New package - orthanc-gdcm

2020-05-28 Thread Sébastien Jodogne
Hi Andreas, >> If this helps, I could consider decompressing the archive and keeping >> only the required source files. Do you think this possible solution >> could mitigate the issue? > > Hmmm, I once had the idea that some "Build-Depends: source-package" > would be somehow handy - but this does

Re: New package - orthanc-gdcm

2020-05-28 Thread Sébastien Jodogne
Hi Andreas, > I've done > > routine-update -f > > to bring some packaging stuff up to date (please git pull). Thanks for your quick feedback! > What > prevented me from uploading is debian/ThirdPartyDownloads. Do you > really need to provide an orthanc code archive here? Wouldn't it be

New package - orthanc-gdcm

2020-05-28 Thread Sébastien Jodogne
Hello, I have prepared a new package for Debian that is called "orthanc-gdcm", and that is related to both Orthanc and GDCM. More precisely, this is a plugin to use the GDCM library in order to transcode and decode images, in place of the default DCMTK-based transcoder/decoder that is built in Or

Re: New target: Re-introduce slicer (Was: Please help to specify COVID-19 packages)

2020-04-03 Thread Sébastien Jodogne
Hello, On 24/03/20 09:31, Andreas Tille wrote: Regarding COVID-19, I'm currently working on enabling Python scripting in Orthanc to automate routing of medical images in hospitals, and on a new generation of 3D viewers (MPR) that can display CT-scans directly in the Web browsers through WebAssem

Initial upload of new package "orthanc-python"

2020-04-01 Thread Sébastien Jodogne
Dear all, I have just packaged a new plugin for Orthanc that can be used to write Orthanc plugins using the Python programming language instead of the more complex C/C++ programming languages [1]. An initial version of the package is now available on Salsa [2]. Please could some Debian Devel

Re: Please help to specify COVID-19 packages [nore...@release.debian.org: macs REMOVED from testing]

2020-03-23 Thread Sébastien Jodogne
Dear Andreas, All the packages related to X-ray chest and CT-scan radiology in clinical setups can be considered as relevant to COVID-19 [1]. DICOM viewers (2D + MPR) and DICOM servers that work out-of-the-box are probably useful. Among others, this includes the packages from the "orthanc" f

Talk about Debian Med at GNUHealthCon / OrthanCon

2019-08-12 Thread Sébastien Jodogne
Dear community, A few time ago, I posted an announcement about the organization of a conference about free software for health informatics and medical imaging [1]. This conference will take place in Liège (Belgium), on December 13-15, 2019 [2]. I feel having a talk about the Debian Med proje

Joint conferences - IWEEE 2019, GNUHealthCon 2019 and OrthancCon 2019

2019-05-14 Thread Sébastien Jodogne
Dear all, I take the liberty of informing you that we're organizing a conference about free software for healthcare and social medicine in Liège (Belgium), on December 13-15, 2019. This event is a joint organization between IWEEE/GNUHealthCon 2019, the yearly meetings of the GNU Health community,

Joint conferences - IWEEE 2019, GNUHealthCon 2019 and OrthancCon 2019

2019-05-14 Thread Sébastien Jodogne
Dear all, I take the liberty of informing you that we're organizing a conference about free software for healthcare and social medicine in Liège (Belgium), on December 13-15, 2019. This event is a joint organization between IWEEE/GNUHealthCon 2019, the yearly meetings of the GNU Health community,

Fwd: orthanc-mysql_1.1-1_amd64.changes REJECTED

2018-11-13 Thread Sébastien Jodogne
Hello, I have received the following message after trying and uploading a new release of the "orthanc-mysql" package. Please could someone allow me to do the upload by myself? Thanks in advance! Regards, Sébastien- Forwarded Message Subject: orthanc-mysql_1.1-1_amd64.cha

Re: Bootstrapping a new project on Salsa

2018-07-18 Thread Sébastien Jodogne
Hi, Would it be possible for you to sponsor this new package? Uploaded. BTW, **I** **personally** do not require you to do the extra step on mentors.d.n. I do not visit this site but just sponsor from our Git repository. Perfect! Duly noted. Thanks again, Sébastien-

Re: Bootstrapping a new project on Salsa

2018-07-18 Thread Sébastien Jodogne
Hi Andreas, Please could someone indicate me how I can bootstrap a new GitHub repository dedicated to this new "orthanc-mysql" package? TIA! You have now permissions to do so yourself. I repeat my recommendation to use inject-into-salsa-git as described here: https://lists.debian.org/de

Re: Bootstrapping a new project on Salsa

2018-07-17 Thread Sébastien Jodogne
Hi Andreas, On 17/07/18 21:03, Andreas Tille wrote: You have now permissions to do so yourself. I repeat my recommendation to use inject-into-salsa-git as described here: Great! Many thanks for your quick answer! I'll dig into the "inject-into-salsa-git" procedure asap. Sébastien-

Bootstrapping a new project on Salsa

2018-07-17 Thread Sébastien Jodogne
Hello, I am in the process of packaging a new set of plugins in order to bring MySQL/MariaDB support to Orthanc [1]. An ITP has just been filled [2]. Please could someone indicate me how I can bootstrap a new GitHub repository dedicated to this new "orthanc-mysql" package? TIA! Kind Regards

Re: NDEBUG and CMake

2018-04-27 Thread Sébastien Jodogne
Dear Gert, On 26/04/18 09:47, Gert Wollny wrote: Am Mittwoch, den 25.04.2018, 12:32 +0200 schrieb Sébastien Jodogne: cmake -DCMAKE_C_FLAGS=-DNDEBUG -DCMAKE_CXX_FLAGS=-DNDEBUG [...] Please someone could validate this approach? TIA! Add this at the top of d/rules: export

Re: NDEBUG and CMake

2018-04-25 Thread Sébastien Jodogne
Hello, Have you tried RelWithDebInfo as the build type? (https://cmake.org/Wiki/CMake_Useful_Variables) This should set NDEBUG but still use -g to get debug symbols. Thanks for the reply. However, previous discussions on Debian clearly state that CMAKE_BUILD_TYPE must be set to None, not to

CMake and NDEBUG

2018-04-25 Thread Sébastien Jodogne
Dear Debian mentors, I write this message as the maintainer of the Debian packages of the Orthanc project [1]. The Debian packages for Orthanc and its associated plugins pay attention to the fact of *not* setting "-DCMAKE_BUILD_TYPE=Release", as requested by the Debian policy [2]. However,

NDEBUG and CMake

2018-04-25 Thread Sébastien Jodogne
Dear all, The Debian packages for Orthanc and its associated plugins pay attention to the fact of *not* setting "-DCMAKE_BUILD_TYPE=Release", as requested by the Debian policy [1]. However, the source code of the upstream Orthanc project makes many calls to the "assert()" function of the sta

Re: FOSDEM devroom

2017-09-15 Thread Sébastien Jodogne
Dear Andreas and Cedric, First of all, thanks to both of you for your interest and for your answers! Unfortunately, only two persons showed an interest in showcasing some free software in such a FOSDEM devroom. Furthermore, as I sadly don't work for an University, my full-time daily job doesn't a

FOSDEM devroom

2017-08-23 Thread Sébastien Jodogne
Med contributors would be interested to give a talk in such a devroom. Please could you express your interest? Regards, Sébastien- [1] https://fosdem.org/2018/ [2] http://slayoo.github.io/fosdem2013/ -- Sébastien Jodogne Mail: s.jodo...@gmail.com Web: http://www.sjodogne.be/ Twitter: https://twitter.com/sjodogne

Re: Cannot upload "orthanc"

2017-06-23 Thread Sébastien Jodogne
> Permissions granted for orthanc orthanc-dicomweb orthanc-imagej > orthanc-postgresql orthanc-webviewer orthanc-wsi - just let me > know if you intend to upload other packages. Its perfectly fine > to do so for fixing bugs or even taking over the maintenance. > > Happy to see you gaining more fr

Re: Cannot upload "orthanc"

2017-06-23 Thread Sébastien Jodogne
Hi, >> Now that I'm qualified as a new DM [1] > > Ahhh, congratulations! :) > DMs need to be explicitly granted permissions per package. Simply send > me your fingerprint and I'll grant you permissions for uploading all > orthan* packages. Great! Here is my fingerprint: 93BE 9F19 7ED5 D0C3

Cannot upload "orthanc"

2017-06-23 Thread Sébastien Jodogne
Dear Andreas, Now that I'm qualified as a new DM [1], I have tried to submit a fix to Debian bug #865606 by myself [2]. Unfortunately, my fix has just been rejected as I'm apparently not allowed to upload to the "orthanc" package [3]. Please would you kindly explain what I should do now? TIA! Sé

Re: Fixes in orthanc-dicomweb and orthanc-webviewer

2017-03-18 Thread Sébastien Jodogne
Hi Andreas, Would it be possible for you to sponsor the upload? Done. Thanks! BTW, I'd recommend considering becoming a Debian Maintainer to enable you uploading yourself. :-) Yes, I'm still looking for some Debian developer who could sign my key after meeting me IRL somewhere in Wallon

Fixes in orthanc-dicomweb and orthanc-webviewer

2017-03-17 Thread Sébastien Jodogne
Dear Andreas, Subsequently to two bug reports introduced by Tiago [1,2], I've just updated the "orthanc-dicomweb" [3] and "orthanc-dicomweb" [4] packages. Would it be possible for you to sponsor the upload? Dear Tiago, Thank you much for the fixes! Regards, Sébastien- [1] https://bugs.

Re: Orthanc for digital pathology

2017-03-01 Thread Sébastien Jodogne
Thanks for the so fast upload, Andreas! :) Could you please suggest task(s) inside the Debian Med scope[1] where the package fits into? HIS IMAGING LAB ONCO PRACTICE Karsten I agree with Karsten's selection. Sébastien-

Re: Orthanc for digital pathology

2017-03-01 Thread Sébastien Jodogne
he changes? Many thanks in advance! Warm Regards, Sébastien- On 29/12/16 12:54, Andreas Tille wrote: Hi Sébastien, On Thu, Dec 29, 2016 at 10:53:41AM +0100, Sébastien Jodogne wrote: As this package is the first free and open-source, reference implementation of DICOM for microscopic whole-sli

Re: Orthanc for digital pathology

2016-12-29 Thread Sébastien Jodogne
/trunk/packages/orthanc-wsi/trunk/ -- Sébastien Jodogne, PhD. Medical Imaging Engineer Department of Medical Physics BAT. T1-3 RADIOTHERAPIE C.H.U. - SART TILMAN - B35 4000 Liège BELGIUM Mail: s.jodo...@gmail.com Web: http://www.montefiore.ulg.ac.be/~jodogne/

Re: Orthanc 1.2.0

2016-12-13 Thread Sébastien Jodogne
n, On Tue, Dec 13, 2016 at 09:21:01PM +0100, Sébastien Jodogne wrote: > I have just packaged the newest upstream version of Orthanc (1.2.0): > http://anonscm.debian.org/cgit/debian-med/orthanc.git/ > > Andreas, please could you sponsor the upload? Thanks in advance! Do you plan to prov

Orthanc 1.2.0

2016-12-13 Thread Sébastien Jodogne
Dear all, I have just packaged the newest upstream version of Orthanc (1.2.0): http://anonscm.debian.org/cgit/debian-med/orthanc.git/ Andreas, please could you sponsor the upload? Thanks in advance! Regards, Sébastien- -- Sébastien Jodogne Mail: s.jodo...@gmail.com Web: http

Re: Bug#844835: orthanc: FTBFS: build-dependency not installable: libssl-dev

2016-11-20 Thread Sébastien Jodogne
Dear Gert, orthnac build depends on libdcmtk-dev, and this pulls in libssl1.0-dev (since dcmtk (a) does not yet support openssl-1.1 and (b) it is used by programs that require QT which conflicts with openssl-1.1). libssl1.0-dev conflicts with libssl-dev, and hence the build failure. The soluti

Re: Bug#844835: orthanc: FTBFS: build-dependency not installable: libssl-dev

2016-11-19 Thread Sébastien Jodogne
hanc-wsi_0.1+dfsg-1.html Sébastien- On Sat, Nov 19, 2016 at 10:30 AM, Sébastien Jodogne wrote: > Dear all, > > I have a problem understanding what is going wrong in the attached bug > report. > > If I open the "debian/control" file of the "orthanc" package

Fwd: Bug#844835: orthanc: FTBFS: build-dependency not installable: libssl-dev

2016-11-19 Thread Sébastien Jodogne
Dear all, I have a problem understanding what is going wrong in the attached bug report. If I open the "debian/control" file of the "orthanc" package, I indeed see that the package Build-Depends on "libssl-dev": https://anonscm.debian.org/cgit/debian-med/orthanc.git/tree/debian/control However,

orthanc-postgresql 2.0-3

2016-10-03 Thread Sébastien Jodogne
Hello, I have just updated the orthanc-postgresql package: https://anonscm.debian.org/viewvc/debian-med?view=revision&revision=22821 This new version of the package solves the severe FTBFS Bug#839309 (orthanc-postgresql: Could NOT find PostgreSQL). In the absence of Andreas, please someone coul

Re: Orthanc 1.1.0

2016-06-29 Thread Sébastien Jodogne
Thanks for all! Sébastien- > On Tue, Jun 28, 2016 at 04:32:39PM +0200, Sebastien Jodogne wrote: > > In complement to yesterday's update of the main "orthanc" package, I have > > just updated two of its companion plugins: > > > > - orthanc-webviewer 2.2 [1] > > Uploaded. > > > - orthanc-dicomw

Re: orthanc-imagej 1.1

2016-04-20 Thread Sébastien Jodogne
Dear Andreas, > > >For me the move is not urgent if the issue above is no real problem for > > >you. > > > > OK, so I propose to move the package to Git. > > Done.[1] > [1] https://anonscm.debian.org/git/debian-med/orthanc-imagej.git Great, thanks! Regards, Sébastien-

Re: Bug#820062: orthanc and orthanc-doc: error when trying to install together

2016-04-08 Thread Sébastien Jodogne
> > Indeed, I am currently running all my integration tests to be sure that > > everything is OK. > > Hmmm, why not adding these tests as autopkgtest? Actually, running these integration tests requires a network connection and a Docker infrastructure. They are much more involved than the unit te

Fix for bug #818512 in Orthanc

2016-04-04 Thread Sébastien Jodogne
Dear all, I am back from vacations. I have just committed the fix for bug #818512 in the "orthanc" package ("FTBFS: Please install libdcmtk*-dev") [1]. Some Lintian issues have been fixed as well. The new version of the package "1.0.0+dfsg-2" is ready [2]. Andreas, would it be possible for you

Re: understanding DICOM workflow

2016-01-18 Thread Sébastien Jodogne
> > does any of the existing plugins show how to add a REST API > > call to Orthanc when loaded ? > > Ah, I see: Samples/Basic/... > :-) Yes, and you can also check the following official plugins to have more complete sample code: http://www.orthanc-server.com/static.php?page=web-viewer http://w

Re: understanding DICOM workflow

2016-01-18 Thread Sébastien Jodogne
Hi, > first of all: I don't expect you to work on all this, much > less _now_. > > I am mainly asking to further my own understanding and to > assess what I can do or what I need to find someone to do. OK ;) > Ah, I see. So, assuming there _would_ be two REST calls > > submit_wl_entry_f

Re: understanding DICOM workflow

2016-01-15 Thread Sébastien Jodogne
> > Yes. The only problem would be to remove the worklist once > > the device has uploaded its acquisition to Orthanc > > How does that happen _now_ with the current ModalityWorkList > plugin ? (without regard to anything I said would be useful > from a GNUmed point of view) The current plugin wi

Re: understanding DICOM workflow

2016-01-14 Thread Sébastien Jodogne
> When the ModalityWorkList plugin is loaded the Orthanc server > gains the following capabilities: > > - watch a given path for files (which represent worklist entries in > DICOM > format) > - when queried appropriately, return answers based on those files > > Is that correct

Re: understanding DICOM workflow

2016-01-14 Thread Sébastien Jodogne
Hello Karsten, > > I have got two questions regarding this plugin: > > > > 1) Are you planning to provide something like this (pseudocode): > > > > curl PUT > > SERVER:worklist/WORLIST_NAME/worklist_file?data=data_of_worklist_file.wl > > > > That way, external software (like GNUmed)

Re: understanding DICOM workflow

2016-01-13 Thread Sébastien Jodogne
Hello Sebastian, I write you as the author of Orthanc [1] that you mentioned in your question. > > What I would like to do: [typical imaging workflow] > > This can indeed be covered by Open Source tools. One well-known Open > Source DICOM toolkit is DCMTK which is developed in Germany. [...] >

Fwd: orthanc REMOVED from testing

2015-12-24 Thread Sébastien Jodogne
Dear all, FYI, orthanc has just been removed from testing. But, the bug that justifies its removal from testing is fixed since November 10th, 2015: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=804571 Is there something that remains to be done to migrate new versions of orthanc to testing?

Re: Orthanc plugins

2015-12-16 Thread Sébastien Jodogne
> > I released today the first stable release of Orthanc (version 1.0.0). I > > have updated the git repository of Debian Med with this new version. Could > > you once again upload it? > > Uploaded. Thanks! > PS: May be you might consider becoming a Debian Maintainer. I think > you are abl

Re: Orthanc plugins

2015-12-16 Thread Sébastien Jodogne
Hi Andreas, > You are welcome. Just tell me if you want me to migrate also the > remaining orthanc-* packages. For me the migration is not that > urgent since there is no change of the original tarball needed but > you might be interested to use a single VCS - so just let me know. Actually, I d

Re: Orthanc plugins

2015-12-11 Thread Sébastien Jodogne
Hi Andreas, > > I have just upgraded all the Orthanc plugins: > > - orthanc-webviewer: version 2.1 > > - orthanc-postgresql: version 2.0 > Both done. > > - orthanc-dicomweb: version 0.2 > Moved to Git since stripped orig.tar.xz and uploaded. Great! Thanks for the uploads and for the move to git

Orthanc plugins

2015-12-10 Thread Sébastien Jodogne
Hello, I have just upgraded all the Orthanc plugins: - orthanc-webviewer: version 2.1 - orthanc-postgresql: version 2.0 - orthanc-dicomweb: version 0.2 Andreas, would it be possible for you to upload these new versions? Thanks in advance! Regards, Sébastien-

Re: Orthanc 0.9.5

2015-12-04 Thread Sébastien Jodogne
updated version of "orthanc-postgresql" will also follow in the next few days. Cheers, Sébastien- > On Thu, Dec 03, 2015 at 09:15:52PM +0100, Sébastien Jodogne wrote: > > > > AFAIC, there is no problem to switch the source of the "orthanc" Debian > > package

Re: Orthanc 0.9.5

2015-12-03 Thread Sébastien Jodogne
Hi Andreas, > > I have just updated the DebianMed repository with the newest upstream > > version of Orthanc (0.9.5) [1]. > > Uploaded. Thanks! > Remark: My personal policy is to migrate those packages that are using > orig.tar.?z archives which are not byte identical with what is > downloaded

Orthanc 0.9.5

2015-12-03 Thread Sébastien Jodogne
Dear all, I have just updated the DebianMed repository with the newest upstream version of Orthanc (0.9.5) [1]. Andreas, if the package looks OK to you, please would you kindly upload it? Thanks in advance! Cheers, Sébastien- [1] http://anonscm.debian.org/viewvc/debian-med/trunk/packages/or

Orthanc - fix bug #804571

2015-11-10 Thread Sébastien Jodogne
Hi Andreas, I have just fixed bug #804571 that was reported yesterday on Orthanc [1,2]. Would it be possible for you to upload this new version (0.9.4+dfsg-2)? TIA, Sébastien- [1] https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=804571 [2] http://anonscm.debian.org/viewvc/debian-med?view=revi

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