Package: ftp.debian.org
Severity: normal
X-Debbugs-Cc: libsis-jhdf5-j...@packages.debian.org, debian-med@lists.debian.org
Control: affects -1 + src:libsis-jhdf5-java
User: ftp.debian@packages.debian.org
Usertags: remove
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512
Hi FTP Team,
I would lik
Hi Andreas,
Le 16/09/2024 à 09:46, Andreas Tille a écrit :
Hi Pierre,
Am Mon, Sep 16, 2024 at 07:24:04AM +0200 schrieb Pierre Gruet:
I would like to remove libsis-jhdf5-java from unstable. To be accurate, it
is rather a proposal by pini in the bug log
https://bugs.debian.org/1078968
Hi,
I would like to remove libsis-jhdf5-java from unstable. To be accurate,
it is rather a proposal by pini in the bug log
https://bugs.debian.org/1078968
which is about libsis-jhdf5-java blocking the upcoming auto-hdf5
transition. pini and I looked at it and it seems difficult to see
Package: wnpp
Severity: wishlist
Owner: Pierre Gruet
X-Debbugs-Cc: debian-de...@lists.debian.org, debian-med@lists.debian.org
* Package name: itkadaptivedenoising
Version : 0.0+git20240619.005bd0e
Upstream Contact: Nick Tustison
* URL : https://github.com/ntustison
Package: wnpp
Severity: wishlist
Owner: Pierre Gruet
X-Debbugs-Cc: debian-de...@lists.debian.org, debian-med@lists.debian.org
* Package name: itkgenericlabelinterpolator
Version : 1.2.1
Upstream Contact:
https://github.com/InsightSoftwareConsortium/ITKGenericLabelInterpolator
Hi,
Le 11/07/2024 à 04:44, Aaron M. Ucko a écrit :
Pierre Gruet writes:
Ah you're right. And indeed, the build goes smoothly without the line.
It may well be a relic of the 2.x days; the build system changed
extensively since then.
I offer to remove the whole line in experimental a
Hi Charles,
Le 08/07/2024 à 03:52, Charles Plessy a écrit :
Le Sat, Jul 06, 2024 at 03:54:21PM +0200, Pierre Gruet a écrit :
As this B-D has alternatives (markdown | libtext-markdown-perl | discount),
we should just remove markdown from the alternatives to prevent sra-sdk and
its rdeps from
Hello Aaron,
Currently sra-sdk build-depends on markdown in unstable and
experimental, and markdown will get removed from testing on the 17th.
At least 12 other packages in our team will be removed as well.
As this B-D has alternatives (markdown | libtext-markdown-perl |
discount), we should
Hi everyone,
Le 05/06/2024 à 18:58, Andreas Tille a écrit :
Hi,
if someone might have time to upgrade SPAdes to its latest version this
would be great. Major upgrades of the spades Debian package are
unfortunately not straightforward due to several code copies shipped with
upstream. Some of t
Hi all,
Le 29/12/2023 à 14:07, Andreas Tille a écrit :
Am Wed, Dec 27, 2023 at 09:43:19PM +0100 schrieb Steffen Möller:
for teaching and meeting reasons.
But as I just wrote, 17-18 also works.
I'd opt for the earlier date, so we have a bit of a break before some of us I
expect to bump into
Hi all,
Le 21/12/2023 à 16:15, Sascha Steinbiss a écrit :
Hi,
[...]
How about Feb 10-11, for example? My weekends are still free for now
so it's
your choice.
I admit I'd prefer Feb. 17-18 over 10-11. Other opinions?
I will be available on both weekends, although I prefer 10-11 over 17-18
Hello,
I fixed bug #1058683, which showed up in igv after an important upgrade
of htsjdk.
Great idea to improve one's Advent bug squashing metrics: upgrade
software, break things, fill bugs, fix them.
Best,
--
Pierre
OpenPGP_signature.asc
Description: OpenPGP digital signature
s
To: Debian Med Packaging Team , Pierre
Gruet
Subject: ugene_49.1+dfsg-1_amd64.changes ACCEPTED into unstable
Thank you for your contribution to Debian.
Accepted:
Format: 1.8
Date: Tue, 12 Dec 2023 14:49:53 +0100
Source: ugene
Binary: ugene ugene-data ugene-dbgsym
Architecture: source all
Hi Nilesh,
Le 05/12/2023 à 21:30, Nilesh Patra a écrit :
On Tue, Nov 28, 2023 at 05:54:30PM +0100, Andreas Tille wrote:
I wonder whether some people from the community might be able to join
our attempt to get this issue fixed and raise their voice inside the
Github issue (or use other channels)
Hi,
Fixing minor bugs #1043696, #1045612, #1046315, #1046647, #1046802,
#1046809, #1047000, #1048408, #1049745. Not crucial, but they offer the
opportunity to do some housekeeping in our packages!
Best,
--
Pierre
OpenPGP_signature.asc
Description: OpenPGP digital signature
Hi Andreas,
Le 27/11/2023 à 11:31, Andreas Tille a écrit :
Hi Pierre,
I realised that you've fixed bug #1054675 (thanks for doinig so) but
You're welcome! :)
that several architectures are failing to build[1] which I do not
understand when looking at the build logs. Since there was a new
u
Hi Andreas,
Le 02/11/2023 à 17:27, Andreas Tille a écrit :
Hi,
its autumn so we should prepare for winter. For Debian Med winter is
the time where we usually do our in person meeting. The last meetings
were in a perfectly fitting location in Berlin and I for myself would
be fine to meet there
Hi Andreas,
Le 18/10/2023 à 18:48, Andreas Tille a écrit :
Hi Pierre (or whoever wants to take this task),
I tried to upgrade bbmap but failed[1]. I stumbled upon the line:
jh_build: error: find current -name '*.java' -and -type f -print0 | xargs -s
512000 -0 /usr/lib/jvm/default-java/bin/ja
Hello Emmanuel,
Le 29/08/2023 à 17:48, Emmanuel Promayon a écrit :
Dear Pierre,
On 25/08/2023 22:46, Pierre Gruet wrote:
Sorry, it seems your questions have remained unanswered for quite some
time. Vacations, summer, ...!
No problem at all, vacations is really important!
On my setup
to the LD_LIBRARY_PATH at the beginning of the
two autopkgtest scripts (test/config-test.sh and cepgenerator-test.sh):
export JAVA_HOME=/usr/lib/jvm/default-java
export LD_LIBRARY_PATH=${JAVA_HOME}/lib/:${JAVA_HOME}/lib/server/
(btw, thanks to a lot to Pierre Gruet who had already done that in d
Hello Rakesh,
Welcome!
Le 25/08/2023 à 14:26, Andreas Tille a écrit :
Hi,
[...]
Admittedly, I'm very busy with other things, so I defer MoM stuff to
Andreas.
I'd also delay past-DebConf but there is no good reason for Rakesh to
wait. All communication is on the list and usually there are
Hi Andreas,
Le 14/07/2023 à 08:14, Andreas Tille a écrit :
Hi Pierre,
[...]
Right now I am preparing the move of my family some hundreds of kilometers
away, I expect to get more time to look at it closer afterwards.
Sure, Real life should have preference over volunteer work. Is the
plac
Hi Andreas,
Le 12/07/2023 à 15:01, Andreas Tille a écrit :
Hi Pierre,
I was wondering whether we might be able to package GATK for the next
release. I've just fixed the watch file in Git. It would be great if
you could have a look once you might find some spare cycles.
Yeah, GATK is one of
Hi Andreas,
Le 10/07/2023 à 10:03, Andreas Tille a écrit :
Hi,
I think we do not need any poll site to decide how to schedule our video
conferences in future. IMHO it makes sense to do it in the beginning of
each month and as far as I understood responses (private and public) it
make sense to
Hi all,
Le 06/07/2023 à 11:04, Andreas Tille a écrit :
Hi,
last time we were wondering whether a monthly video meeting is more
sensible. Its not that much we need to talk about (in case there is
something we can perfectly do ad hoc meetings) and may be its enough to
meet only once a month. If
Hi again,
Le 17/06/2023 à 22:14, Pierre Gruet a écrit :
Hi all,
Le 17/06/2023 à 19:37, Nilesh Patra a écrit :
On 06/17/2023 11:21 AM IST Andreas Tille wrote:
'''
1.10. "Research Purposes" means use for internal research and not
intended
for or directed towards
Hi all,
Le 17/06/2023 à 19:37, Nilesh Patra a écrit :
On 06/17/2023 11:21 AM IST Andreas Tille wrote:
'''
1.10. "Research Purposes" means use for internal research and not intended
for or directed towards commercial advantages or monetary compensation;
provided, however, that monetary compensa
Hi all,
Le 25/05/2023 à 09:51, Andreas Tille a écrit :
Hi Nilesh,
Am Wed, May 24, 2023 at 10:16:22PM +0530 schrieb Nilesh Patra:
On Wed, May 24, 2023 at 11:28:13AM +0200, Pierre Gruet wrote:
Le 24/05/2023 à 08:25, Andreas Tille a écrit :
https://salsa.debian.org/med-team/community
Hello Andreas,
Le 24/05/2023 à 08:25, Andreas Tille a écrit :
Hi,
as for every release we want to increase or visibility to show
up in the release notes. I've drafted a patch
https://salsa.debian.org/med-team/community/communication/-/blob/master/releasenotes/bookworm/release-notes.patch
Hi Andreas,
Le 09/05/2023 à 18:36, Andreas Tille a écrit :
Hi Pierre,
Am Mon, May 08, 2023 at 10:50:54PM +0200 schrieb Pierre Gruet:
It is very nice to hear from you on Nextflow, this is a motivation booster
for the packaging!
+1
I have indeed packaged many dependencies, and if I
Hi Steffen,
Le 05/05/2023 à 22:16, Steffen Möller a écrit :
Hello,
I must admit that I am rather impressed - a series of images were
auto-downloaded to function together with singularity and this then worked on a
test data collection of the workflow. So, with singularity (or docker) in
Debia
Hi Benjamin,
Le 28/03/2023 à 03:52, Benjamin Redelings a écrit :
Hi,
I'd like to upload a new version 4.0-beta2 of bali-phy. It decreases
memory usage over the existing 3.6.1 by > 20fold in some cases.
The first question I have is about using uscan with the "-beta2"
suffix. I hacked the de
Hi Andreas,
Le 03/02/2023 à 13:05, Andreas Tille a écrit :
Hi Pierre,
Am Fri, Feb 03, 2023 at 11:32:07AM +0100 schrieb Pierre Gruet:
[16:13:15] Found snippy-vcf_to_tab - /usr/bin/snippy-vcf_to_tab
[16:13:15] Found snippy-vcf_report - /usr/bin/snippy-vcf_report
[16:13:15] Checking version
Hi Andreas,
Le 03/02/2023 à 11:17, Andreas Tille a écrit :
Hi,
I realised that snippy autopkgtest is failing for i386 and s390x[1]
The log for i386[2] says:
Get:310 http://deb.debian.org/debian testing/main i386 libsnpeff-java all
5.1+d+dfsg-3 [2,150 kB]
...
[16:13:15] Found snpEff - /usr/bi
Hi all,
Le 22/12/2022 à 17:17, Andreas Tille a écrit :
Am Thu, Dec 22, 2022 at 08:55:27PM +0530 schrieb Nilesh Patra:
I see three options:
1. Revert mcl to past version
From a user base point of view I do not consider this a good option.
2. Wait for upstream reaction on ocaml support f
Hi Andreas and everyone,
Le 18/01/2023 à 11:28, Andreas Tille a écrit :
Am Wed, Jan 18, 2023 at 07:56:55AM +0100 schrieb Andreas Tille:
Hi,
Am Tue, Jan 17, 2023 at 10:07:28PM +0100 schrieb Sascha Steinbiss:
FYI the Vietnamese place (Viet Kitchen) around the corner has many vegan
options and i
Hi all,
Le 16/01/2023 à 19:27, Andreas Tille a écrit :
Hi,
on top of the small hotel at EUREF-Campus 22 there is a lounge for 8
persons. I can book this with Debian sponsored money for the evening -
so we can meet there. Who would like to join and at what time do
we want to meet? They hotel
Hello,
Le 22/12/2022 à 14:21, Nilesh Patra a écrit :
Hi Pierre, all,
Recent rebuilds have led to bug reports #1026659 and #1026764 for
aeonbits-owner and capsule-maven-nextflow
respectively.
As you might have guessed, both of them are java packages and I've quite
frankly been unable to figure
Hi Nilesh and everyone,
Le 22/12/2022 à 14:21, Nilesh Patra a écrit :
Hi Pierre, all,
Recent rebuilds have led to bug reports #1026659 and #1026764 for
aeonbits-owner and capsule-maven-nextflow
respectively.
As you might have guessed, both of them are java packages and I've quite
frankly been
, 16 Dec 2022 22:24:05 +
De : Debian Bug Tracking System
Répondre à : 1025...@bugs.debian.org
Pour : Pierre Gruet
Your message dated Fri, 16 Dec 2022 22:20:56 +
with message-id
and subject line Bug#1025953: fixed in libhmsbeagle 3.1.2+dfsg-13
has caused the Debian Bug report #1025953
Hello,
I fixed bug #1025887 in biojava4-live thanks to a patch submitted along
with the bug report.
Also I eased the migration to testing of a few packages with
long-standing failing migrations (autopkgtests and architectures
problems essentially) and I opened some bugs -- so my contribution t
Hi Andreas,
Le 27/11/2022 à 07:07, Andreas Tille a écrit :
Hi Pierre,
when fixing the watch file I stumbled upon an autopkgtest error[1].
Do you have an idea what might be wrong here?
At last I found classpath issues in the build, and I could provide a
cleaner way to build the jar which was
Hi Andreas,
Le 27/11/2022 à 07:07, Andreas Tille a écrit :
Hi Pierre,
when fixing the watch file I stumbled upon an autopkgtest error[1].
Do you have an idea what might be wrong here?
My guess is there is a missing jar in the manifest of the jar shipped by
libmilib-java, which I updated two
Hi Andreas,
Le 25/11/2022 à 10:57, Andreas Tille a écrit :
Hi,
I just realised that libsbml moved to Github. After fixing the watch
file I tried to package the latest upstream version. Unfortunately
the build fails and I see the lines
/builds/med-team/libsbml/debian/output/source_dir/src/bin
Hi,
Le 22/11/2022 à 14:38, Andreas Tille a écrit :
Hi Sascha,
Am Tue, Nov 22, 2022 at 12:38:21AM +0100 schrieb Sascha Steinbiss:
I have been in touch with our front desk and it looks like a meeting at my
employer here is doable in principle, given the same conditions as last
time. So I guess
Hi everyone,
Le 29/10/2022 à 21:28, Nilesh Patra a écrit :
Hi,
I suppose sprints in 2021 and 2022 have been virtual so far due to COVID.
There were some COVID related sprints in 2020 as well.
Is there a possibilty to have an in-person debian-med sprint in 2023?
Would someone be interested in i
Hi everyone,
Le 01/11/2022 à 16:35, Andreas Tille a écrit :
Hi,
this is the call for the next video conference of the Debian Med team
[...]
For those who are interested in hot topics we want to tackle, here
are some items:
- RC bugs
- Pushing latest versions of our software
While I
Hi Andreas,
Le 26/10/2022 à 11:24, Andreas Tille a écrit :
Hi Pierre,
Am Wed, Oct 26, 2022 at 10:41:51AM +0200 schrieb Pierre Gruet:
[1] https://salsa.debian.org/med-team/gdcm/-/jobs/3427720
This is really just a missing include dir, as the problematic header is in
/usr/lib/jvm/default-java
Hi,
Le 26/10/2022 à 10:35, Andreas Tille a écrit :
Hi Mathieu,
Am Wed, Oct 26, 2022 at 08:10:42AM +0200 schrieb Mathieu Malaterre:
On Wed, Oct 26, 2022 at 7:53 AM Andreas Tille wrote:
Hi,
in the bug log there is some discussion to drop C# and Java VTK
bindings. This would mean to drop the
Hi Andreas,
Le 24/10/2022 à 09:58, Andreas Tille a écrit :
Hi Pierre,
I've updated beast2-mcmc in Git but the new upstream version fails to
build[1] which has hopefully a simple fix.
Thanks for drawing my attention on this issue. I pushed the effort
forward, but now half of the tests are fai
Package: wnpp
Severity: wishlist
Owner: Debian-med team
X-Debbugs-Cc: debian-de...@lists.debian.org, debian-med@lists.debian.org
* Package name: libmjson-java
Version : 1.4.0
Upstream Author : Miami-Dade County
* URL : https://bolerio.github.io/mjson/
* License
Package: wnpp
Severity: wishlist
Owner: Debian-med team
X-Debbugs-Cc: debian-de...@lists.debian.org, debian-med@lists.debian.org
* Package name: biojava6-live
Version : 6.0.5
Upstream Author : BioJava Developers
* URL : https://biojava.org
* License : LGPL-2.1
Hi Aaron,
Le 14/10/2022 à 02:05, Aaron M. Ucko a écrit :
Pierre Gruet writes:
I have just pushed some changes. I adopted the -- I believe -- least
invasive solution by creating a new package libngs-jni which depends
on the shared lib package (not the -dev one), only ships a symlink to
the
Hi Aaron,
Le 12/10/2022 à 04:48, Aaron M. Ucko a écrit :
Pierre Gruet writes:
Indeed, this warning should be overridden, usually I do so and add a
pointer to the discussion in
https://lists.debian.org/debian-java/2018/06/msg00021.html in the
comment in the .lintian-overrides file.
Got it
Hi Aaron and Andreas,
Le 11/10/2022 à 15:06, Aaron M. Ucko a écrit :
Andreas Tille writes:
I wanted to set you "Owner" of the Debian Med team repository since this
is the maximum power. I realised you are owner. So either someone has
beaten me and just did so or something is wrong if you ca
Hello Flavien,
We have just had this bug report on sight:
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1016276
My last upload of sight was 15 days ago with no issue. Anyway, if you
have some time to look at it, it will be useful!
Best wishes,
--
Pierre
OpenPGP_signature
Descri
Hi Andreas,
Le 26/07/2022 à 13:50, Andreas Tille a écrit :
Hi,
from my perspective the CMakeLists.txt of tiddit has not changed compared
to the last upstream version. Unfortunately the build fails[1] with
CMake Error at CMakeLists.txt:42 (add_executable):
No SOURCES given to
Package: wnpp
Severity: wishlist
Owner: Debian-med team
X-Debbugs-Cc: debian-de...@lists.debian.org, debian-med@lists.debian.org
* Package name: genomicsdb
Version : 1.4.3
Upstream Author : Intel Health and Lifesciences
* URL : https://www.genomicsdb.org/
* License
Package: wnpp
Severity: wishlist
Owner: Debian-med team
X-Debbugs-Cc: debian-de...@lists.debian.org, debian-med@lists.debian.org
* Package name: gatk-bwamem
Version : 1.0.4
Upstream Author : Broad Institute
* URL : https://github.com/broadinstitute/gatk-bwamem-jni/
* L
Hi Andreas and tony,
Le 01/07/2022 à 19:13, tony mancill a écrit :
On Thu, Jun 30, 2022 at 05:06:50PM +0200, Andreas Tille wrote:
Hi Pierre (and others)
I injected latest version of milib which moved to gradle even in some
versions before. My extremely weak attempt to switch to gradle failed
Hi everyone,
Le 24/06/2022 à 22:15, Étienne Mollier a écrit :
[...]
In the light of Andreas' own time shrinking, my id is also
available if need be (disregarding the fact that I felt having
the head underwater in the past few months myself). I'll try to
add myself systematically when interven
Hi Olivier, Andreas, Steffen,
Le 28/03/2022 à 17:54, Steffen Möller a écrit :
On 28.03.22 17:15, Andreas Tille wrote:
Am Mon, Mar 28, 2022 at 04:42:15PM +0200 schrieb olivier sallou:
...
that's fine for me
Thanks a lot for this effort
Many thanks - brings some memories back!
Steffen
Th
1-07 15:25:19.0
+0100
+++ artemis-18.1.0+dfsg/debian/changelog2022-02-28 18:24:58.0
+0100
@@ -1,3 +1,9 @@
+artemis (18.1.0+dfsg-7) UNRELEASED; urgency=medium
+
+ * Changing coordinates of biojava, which is now Maven-packaged
+
+ -- Pierre Gruet Mon, 28 Feb 2022 18:2
Hi Guillem,
Le 28/03/2022 à 13:43, Guillem Jover a écrit :
Hi!
On Sat, 2022-03-26 at 14:59:17 +0100, Pierre Gruet wrote:
Package: wnpp
Severity: wishlist
Owner: Debian-med team
X-Debbugs-Cc: debian-de...@lists.debian.org, debian-med@lists.debian.org
* Package name: http-nio
Version
Package: wnpp
Severity: wishlist
Owner: Debian-med team
X-Debbugs-Cc: debian-de...@lists.debian.org, debian-med@lists.debian.org
* Package name: http-nio
Version : 0.1.0
Upstream Author : Daniel Gomez-Sanchez
* URL : https://github.com/lbergelson/http-nio
* License
Package: wnpp
Severity: wishlist
Owner: Debian-med team
X-Debbugs-Cc: debian-de...@lists.debian.org, debian-med@lists.debian.org
* Package name: gatk-fermilite
Version : 1.2.1
Upstream Author : Broad Institute
* URL : https://github.com/broadinstitute/gatk-fermilite-jn
Hi Andrius,
Thanks for looking at my issue.
Le 14/03/2022 à 06:03, Andrius Merkys a écrit :
Hi Pierre,
On 2022-03-13 16:35, Pierre Gruet wrote:
My proposal would be to design a multiple upstream tarball for
gatk-bwamem-jni: original one + the sources at the tip of the Apache2
branch of bwa
Hi Nilesh,
Thanks for the quick answer. Your advice is much appreciated, as always.
Le 13/03/2022 à 15:46, Nilesh Patra a écrit :
On 3/13/22 8:05 PM, Pierre Gruet wrote:
What should I do? My proposal would be to design a multiple upstream
tarball for gatk-bwamem-jni: original one + the
Hello everyone,
I need your advice on a packaging issue I am meeting right now.
I am in the course of packaging gatk-bwamem-jni [0], providing a native
interface which allows one to use bwa (Debian packaged [1]) from Java
code. Fine.
But the upstream of gatk-bwamem-jni relies on a version of
Package: wnpp
Severity: wishlist
Owner: Debian med team
X-Debbugs-Cc: debian-de...@lists.debian.org, debian-med@lists.debian.org
* Package name: aeonbits-owner
Version : 1.0.12
Upstream Author : Luigi R. Viggiano
* URL : http://owner.aeonbits.org/
* License : B
Package: wnpp
Severity: wishlist
Owner: Debian-med team
X-Debbugs-Cc: debian-de...@lists.debian.org, debian-med@lists.debian.org
* Package name: snpsift
Version : 5.1
Upstream Author : Pablo Cingolani
* URL : https://pcingola.github.io/SnpEff/ss_introduction/
* Licens
Hi Andrius,
Le 18/02/2022 à 17:21, Andrius Merkys a écrit :
Hi Pierre,
On 2022-02-18 17:52, Pierre Gruet wrote:
To give a bit of context: I am currently writing autopkgtests for
htsjdk, which is one Java library we maintain in the team. Those
autopkgtests should test reverse-dependencies to
Hi everyone,
To give a bit of context: I am currently writing autopkgtests for
htsjdk, which is one Java library we maintain in the team. Those
autopkgtests should test reverse-dependencies to ease upgrades of htsjdk.
When designing such tests, I would need data to run, let's say, artemis
or
Hi,
Le 12/02/2022 à 06:42, Andreas Tille a écrit :
Very cool!
You're welcome!
Eventually, all the .class files in the archive were just igv and its
dependencies, so that I could remove all of them and have igv as the
sole dependency of the binary package :-)
Best regards,
--
Pierre
Package: wnpp
Severity: wishlist
Owner: Debian-med team
X-Debbugs-Cc: debian-de...@lists.debian.org, debian-med@lists.debian.org
* Package name: rockhopper
Version : 2.0.3
Upstream Author : Brian Tjaden
* URL : https://cs.wellesley.edu/~btjaden/Rockhopper
* License
Hi again,
Le 03/02/2022 à 22:22, Andreas Tille a écrit :
Am Thu, Feb 03, 2022 at 02:42:40PM +0100 schrieb Pierre Gruet:
Yes, just before looking at king/libpdfbox-graphics2d-java I was updating
snpeff and seeing if I could turn some unit tests into autopkgtests -- and I
trust I can, this is
Hi Andreas,
Le 03/02/2022 à 10:31, Andreas Tille a écrit :
Hi,
Am Sat, Jan 22, 2022 at 09:49:32PM +0100 schrieb Pierre Gruet:
I did the upload -- I agree autopkgtests would be valuable, still. Yet I
remember the tests I did when designing the package last Spring, and I feel
providing a
Hi,
Le 28/01/2022 à 22:42, Andreas Tille a écrit :
Am Fri, Jan 28, 2022 at 10:11:27PM +0100 schrieb pgtdeb...@free.fr:
If you want, I would be happy to package pdfbox-graphics2d. I can do that
very soon.
Else, please tell me if you start something :-)
I've pushed
https://salsa.debian.o
Hi Andreas,
Le 28/01/2022 à 22:42, Andreas Tille a écrit :
Am Fri, Jan 28, 2022 at 10:11:27PM +0100 schrieb pgtdeb...@free.fr:
If you want, I would be happy to package pdfbox-graphics2d. I can do that
very soon.
Else, please tell me if you start something :-)
I've pushed
https://salsa.
Hi Andreas,
Le 28/01/2022 à 22:30, Andreas Tille a écrit :
Am Fri, Jan 28, 2022 at 10:11:27PM +0100 schrieb pgtdeb...@free.fr:
If you want, I would be happy to package pdfbox-graphics2d. I can do that
very soon.
Else, please tell me if you start something :-)
I've just collected a basic debi
Dear all,
Le 24/01/2022 à 16:09, Andreas Tille a écrit :
Hi folks,
on Mon, 21 Jan 2002 11:59:11 +0100 the first mail to this list was
sent[1]. So somehow we can celebrate some anniversary. :-)
Great :-) Happy to celebrate this!
Since 11 years we are doing team sprints - preferably face to
Hi again Andreas,
Le 22/01/2022 à 21:24, Andreas Tille a écrit :
Hi Pierre,
Am Sat, Jan 22, 2022 at 08:37:54PM +0100 schrieb Pierre Gruet:
Le 22/01/2022 à 16:43, Andreas Tille a écrit :
Thanks a lot Pierre for fixing it quickly in a new upload. Its a
great step forward if we have this
[redirecting to debian-med@lists.debian.org for information]
Hi Andreas,
Le 22/01/2022 à 16:43, Andreas Tille a écrit :
Thanks a lot Pierre for fixing it quickly in a new upload. Its a
great step forward if we have this package.
Thanks also to Thorsten for checking
You're welcome! Thanks fo
Package: wnpp
Severity: wishlist
Owner: Debian-med team
X-Debbugs-Cc: debian-de...@lists.debian.org, debian-med@lists.debian.org
* Package name: malt
Version : 0.5.2
Upstream Author : Daniel Huson
* URL : https://github.com/danielhuson/malt
* License : GPL-3+
Package: wnpp
Severity: wishlist
Owner: Debian-med team
X-Debbugs-Cc: debian-de...@lists.debian.org, debian-med@lists.debian.org
* Package name: megan-ce
Version : 6.21.1
Upstream Author : Daniel Huson
* URL : https://github.com/danielhuson/megan-ce
* License
Hi Andreas,
On 23/12/2021 19:42, Andreas Tille wrote:
Hi Pierre,
Am Thu, Dec 23, 2021 at 05:42:24PM +0100 schrieb Pierre Gruet:
You're welcome! Thanks for your help on this.
That's team work, isn't it? ;-)
Sure ! :)
BTW, if you are seeking new challanges: It would b
Hi Andreas,
On 23/12/2021 17:27, Andreas Tille wrote:
Thanks Pierre for your work. :-)
Maintainer: Debian Med Packaging Team
Changed-By: Pierre Gruet
Closes: 1002155
Changes:
libgoby-java (3.3.1+dfsg2-6) unstable; urgency=medium
.
* Adding --no-parallel flag to dh_auto_test to avoid
Control: tags -1 unreproducible help
Hi,
Currently I am not able to reproduce the issue on my computer nor on
several machines of the Debian project.
I shall investigate further a bit later, but so far looking at a diff
between the provided build log and mine has not helped.
The warning me
Hello Lance,
On 21/12/2021 14:33, Lance Lin wrote:
Debian Medical Team,
I have started looking at adding autopkgtest suites for a variety of packages.
Two of the packages (hinge, pique) require very large data sets to run their
included examples. The sizes are several GB. It also looks like t
Hi Andreas,
On 18/12/2021 08:52, Andreas Tille wrote:
Hi Pierre,
Am Fri, Dec 17, 2021 at 11:27:50PM +0100 schrieb Pierre Gruet:
I have just uploaded latest upstream version of pilon to unstable, together
with a fix for the scala issues showing up. Normally we would have had to
update scala
Hi Andreas,
On 09/09/2021 14:21, Andreas Tille wrote:
Hi Pierre,
thanks a lot for your educated answer.
On Thu, Sep 09, 2021 at 12:48:33PM +0200, Pierre Gruet wrote:
Any hint how to fix this?
Well, /maybe/ we could patch this last pilon version to use Scala 2.11 with
it... but I see there
RC bug in sight is now fixed!
Forwarded Message
Subject: Bug#1001681: marked as done (sight: FTBFS in unstable)
Date: Thu, 16 Dec 2021 06:21:03 +
From: Debian Bug Tracking System
Reply-To: 1001...@bugs.debian.org
To: Pierre Gruet
Your message dated Thu, 16 Dec 2021 06
Hi,
Newest picard-tools is in unstable, and I fixed the two bugs the source
package had!
Best,
Pierre
Hi Nilesh,
Le 23/11/2021 à 19:11, Nilesh Patra a écrit :
Hi,
It looks like profphd has a open RC bug for a little over two years by now,
and upstream looks dead.
It has only reverse-recommends, no reverse-(build-)depends
$ reverse-depends profphd
Reverse-Recommends
* norsnet
* norsp
* profbval
Hi,
Le 10/11/2021 à 15:14, Andreas Tille a écrit :
Hi,
I realised that libjung-java "smells"[1] and in fact it was not uploaded
a long time and has some maintenance issues. I tried to build the
current state in Git but it fails the API fails to build. I hope this is
not a big issue for a Java
Hi Andreas,
Le 09/11/2021 à 18:29, Andreas Tille a écrit :
Hi Pierre,
Am Tue, Nov 09, 2021 at 06:02:39PM +0100 schrieb Pierre Gruet:
If you are not able to reproduce I can send a full build log. It would
be fine for me if you would just fix - build - upload yourself. I just
wanted to help
Hi Andreas,
Le 09/11/2021 à 07:55, Andreas Tille a écrit :
Hi Pierre,
thanks a lot for all your work on this.
You are welcome! Indeed I am very pleased this long-term target of mine
is now reached!
I intended to do a source-only upload and when doing so at least fixing
the watch file (I re
Package: wnpp
Severity: wishlist
Owner: Debian-med team
X-Debbugs-Cc: debian-de...@lists.debian.org, debian-med@lists.debian.org
* Package name: biojava5-live
Version : 5.4.0
Upstream Author : BioJava Developers
* URL : https://www.biojava.org/
* License : LGP
Hi Andreas,
Le 13/10/2021 à 07:38, Andreas Tille a écrit :
Hi Pierre,
Am Tue, Oct 12, 2021 at 09:13:49PM +0200 schrieb Pierre Gruet:
Cool. I also think we should pimp biojava4 watch file to return the last
upstream source of biojava4 and than also provide biojava5. We will soon
see
Hi again,
Le 12/10/2021 à 18:58, Andreas Tille a écrit :
Hi Pierre,
Am Tue, Oct 12, 2021 at 03:29:33PM +0200 schrieb Pierre Gruet:
I have added biojava4 as a dependency, then some paths had to be changed
because upstream relies on a far outdated version of biojava, and then I had
to revise
1 - 100 of 241 matches
Mail list logo
