Re: Java-help for BBMap needed

2016-03-20 Thread Felix Natter
Felix Natter writes: > hello Andreas, hello again Andreas, > Felix Natter writes: >>> symbol: method getRank() >>> location: variable COMM_WORLD of type Intracomm >>> current/stream/mpi/MPIWrapper.java:49: error: cannot find symbol >>> Shared.MPI_NUM_RANKS=MPI

Re: Java-help for BBMap needed

2016-03-20 Thread Andreas Tille
Hi again, the issue below has a simple explanation: I do not need mpj but rather mpi which should be available by enabling the java interface in the openmpi source package. Sorry for the confusion Andreas. On Sun, Mar 20, 2016 at 06:04:39PM +0100, Andreas Tille wrote: > > > > symbol:

Re: Java-help for BBMap needed

2016-03-20 Thread Felix Natter
hello Andreas, Felix Natter writes: >> symbol: method getRank() >> location: variable COMM_WORLD of type Intracomm >> current/stream/mpi/MPIWrapper.java:49: error: cannot find symbol >> Shared.MPI_NUM_RANKS=MPI.COMM_WORLD.getSize(); >>

Re: Java-help for BBMap needed

2016-03-20 Thread Andreas Tille
On Sun, Mar 20, 2016 at 04:27:55PM +0100, Felix Natter wrote: > > project but has no dedicated Build-System - it does not even create a > > JAR. My very naive approach to create a JAR ended up in > > The package your are developing uses "javahelper" helper, > which takes care of compiling and gen

Re: Java-help for BBMap needed

2016-03-20 Thread Felix Natter
Andreas Tille writes: > Hi, hello Andreas, > I just injected some rudimentary packaging for BBMap[1] which is a Java > project but has no dedicated Build-System - it does not even create a > JAR. My very naive approach to create a JAR ended up in The package your are developing uses "javahelp

Java-help for BBMap needed

2016-03-19 Thread Andreas Tille
Hi, I just injected some rudimentary packaging for BBMap[1] which is a Java project but has no dedicated Build-System - it does not even create a JAR. My very naive approach to create a JAR ended up in ... jar -cmf debian/manifest bbmap.jar `find current -name "*.class"` current/stream/mpi/MPIWr