Hi,
I just injected some rudimentary packaging for BBMap[1] which is a Java
project but has no dedicated Build-System - it does not even create a
JAR. My very naive approach to create a JAR ended up in
...
jar -cmf debian/manifest bbmap.jar `find current -name "*.class"`
current/stream/mpi/MPIWrapper.java:48: error: cannot find symbol
Shared.MPI_RANK=MPI.COMM_WORLD.getRank();
^
symbol: method getRank()
location: variable COMM_WORLD of type Intracomm
current/stream/mpi/MPIWrapper.java:49: error: cannot find symbol
Shared.MPI_NUM_RANKS=MPI.COMM_WORLD.getSize();
^
symbol: method getSize()
location: variable COMM_WORLD of type Intracomm
current/stream/mpi/MPIWrapper.java:82: error: cannot find symbol
MPI.COMM_WORLD.bcast(bLength,1,MPI.INT,0); // can't
probe a broadcast, so send message size first
^
symbol: method bcast(int[],int,Datatype,int)
location: variable COMM_WORLD of type Intracomm
current/stream/mpi/MPIWrapper.java:83: error: cannot find symbol
MPI.COMM_WORLD.bcast(b,b.length,MPI.BYTE,0); //
broadcast the actual message
^
symbol: method bcast(byte[],int,Datatype,int)
location: variable COMM_WORLD of type Intracomm
Any idea how to fix this?
Kind regards
Andreas.
[1] https://anonscm.debian.org/git/debian-med/bbmap.git
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