Re: Help needed to build prottest

2018-07-13 Thread Andreas Tille
On Fri, Jul 13, 2018 at 01:12:07PM +0200, Markus Koschany wrote: > It turned out that the import statement must be adapted to the new > location. Patch is attached. Thanks a lot Andreas. -- http://fam-tille.de

Re: Help needed to build prottest

2018-07-13 Thread Markus Koschany
Am 13.07.2018 um 11:02 schrieb Andreas Tille: [...] > > Hmmm, not sure whether this is the same question. I always have trouble > to find out in what package the respective JAR can be found. In the > current case when browsing the alter.jar content the respective classes > are just moved to a sb

Re: Help needed to build prottest

2018-07-13 Thread Andreas Tille
Hi Markus, On Thu, Jul 12, 2018 at 10:56:19PM +0200, Markus Koschany wrote: > > Any idea how to fix this? > > Some of those class files are in alter.jar [1] but I don't know the > corresponding upstream project. It is alter-sequence-alignment and I've just updated this to the new upstream versio

Re: Help needed to build prottest

2018-07-12 Thread Markus Koschany
Hi, Am 11.07.2018 um 23:02 schrieb Andreas Tille: [...] > > Any idea how to fix this? Some of those class files are in alter.jar [1] but I don't know the corresponding upstream project. If you get "package X does not exist or cannot find symbol" errors, you have to build-depend on the respective

Help needed to build prottest

2018-07-11 Thread Andreas Tille
Hi, when migrating prottest to Salsa[1] I was running into a FTBFS: ... Buildfile: /build/prottest-3.4.2+dfsg/build.xml compile: [mkdir] Created dir: /build/prottest-3.4.2+dfsg/build/classes [javac] Using javac -source 1.6 is no longer supported, switching to 7 [javac] Using javac -t