Am 13.07.2018 um 11:02 schrieb Andreas Tille: [...] > > Hmmm, not sure whether this is the same question. I always have trouble > to find out in what package the respective JAR can be found. In the > current case when browsing the alter.jar content the respective classes > are just moved to a sbdirectory hierarchy: > > es/uvigo/ei/sing/alter > > I wonder whether I simply have build alter-sequence-alignment wrongly > or whether prottest needs to be adapted to the new location.
It turned out that the import statement must be adapted to the new location. Patch is attached. Cheers, Markus
From: Markus Koschany <a...@debian.org> Date: Fri, 13 Jul 2018 13:05:25 +0200 Subject: alter import --- .../es/uvigo/darwin/prottest/util/fileio/AlignmentReader.java | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/src/main/java/es/uvigo/darwin/prottest/util/fileio/AlignmentReader.java b/src/main/java/es/uvigo/darwin/prottest/util/fileio/AlignmentReader.java index 8d08537..dc12930 100644 --- a/src/main/java/es/uvigo/darwin/prottest/util/fileio/AlignmentReader.java +++ b/src/main/java/es/uvigo/darwin/prottest/util/fileio/AlignmentReader.java @@ -17,9 +17,9 @@ Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA */ package es.uvigo.darwin.prottest.util.fileio; -import converter.Converter; -import converter.DefaultFactory; -import converter.Factory; +import es.uvigo.ei.sing.alter.converter.Converter; +import es.uvigo.ei.sing.alter.converter.DefaultFactory; +import es.uvigo.ei.sing.alter.converter.Factory; import java.io.IOException; import java.io.PrintWriter; import java.io.PushbackReader; @@ -44,7 +44,7 @@ import pal.tree.Tree; import pal.tree.TreeParseException; // TODO: Auto-generated Javadoc -import parser.ParseException; +import es.uvigo.ei.sing.alter.parser.ParseException; /** * The Class AlignmentReader. */
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