Hi,
when migrating prottest to Salsa[1] I was running into a FTBFS:
...
Buildfile: /build/prottest-3.4.2+dfsg/build.xml
compile:
[mkdir] Created dir: /build/prottest-3.4.2+dfsg/build/classes
[javac] Using javac -source 1.6 is no longer supported, switching to 7
[javac] Using javac -target 1.6 is no longer supported, switching to 7
[javac] Compiling 118 source files to
/build/prottest-3.4.2+dfsg/build/classes
[javac] warning: [options] bootstrap class path not set in conjunction with
-source 7
[javac]
/build/prottest-3.4.2+dfsg/src/main/java/es/uvigo/darwin/prottest/util/fileio/AlignmentReader.java:20:
error: package converter does not exist
[javac] import converter.Converter;
[javac] ^
[javac]
/build/prottest-3.4.2+dfsg/src/main/java/es/uvigo/darwin/prottest/util/fileio/AlignmentReader.java:21:
error: package converter does not exist
[javac] import converter.DefaultFactory;
[javac] ^
[javac]
/build/prottest-3.4.2+dfsg/src/main/java/es/uvigo/darwin/prottest/util/fileio/AlignmentReader.java:22:
error: package converter does not exist
[javac] import converter.Factory;
[javac] ^
[javac]
/build/prottest-3.4.2+dfsg/src/main/java/es/uvigo/darwin/prottest/util/fileio/AlignmentReader.java:47:
error: package parser does not exist
[javac] import parser.ParseException;
[javac] ^
[javac]
/build/prottest-3.4.2+dfsg/src/main/java/es/uvigo/darwin/prottest/util/fileio/AlignmentReader.java:115:
error: cannot find symbol
[javac] Factory factory = new DefaultFactory();
[javac] ^
[javac] symbol: class Factory
[javac] location: class AlignmentReader
[javac]
/build/prottest-3.4.2+dfsg/src/main/java/es/uvigo/darwin/prottest/util/fileio/AlignmentReader.java:115:
error: cannot find symbol
[javac] Factory factory = new DefaultFactory();
[javac] ^
[javac] symbol: class DefaultFactory
[javac] location: class AlignmentReader
[javac]
/build/prottest-3.4.2+dfsg/src/main/java/es/uvigo/darwin/prottest/util/fileio/AlignmentReader.java:116:
error: cannot find symbol
[javac] Converter converter;
[javac] ^
[javac] symbol: class Converter
[javac] location: class AlignmentReader
[javac]
/build/prottest-3.4.2+dfsg/src/main/java/es/uvigo/darwin/prottest/util/fileio/AlignmentReader.java:133:
error: cannot find symbol
[javac] } catch (ParseException ex) {
[javac] ^
[javac] symbol: class ParseException
[javac] location: class AlignmentReader
[javac]
/build/prottest-3.4.2+dfsg/src/main/java/es/uvigo/darwin/prottest/util/fileio/AlignmentReader.java:149:
error: cannot find symbol
[javac] } catch (ParseException exP) {
[javac] ^
[javac] symbol: class ParseException
[javac] location: class AlignmentReader
[javac] Note: Some input files use or override a deprecated API.
[javac] Note: Recompile with -Xlint:deprecation for details.
[javac] Note: Some input files use unchecked or unsafe operations.
[javac] Note: Recompile with -Xlint:unchecked for details.
[javac] 9 errors
[javac] 1 warning
BUILD FAILED
/build/prottest-3.4.2+dfsg/build.xml:37: Compile failed; see the compiler error
output for details.
...
Any idea how to fix this?
Kind regards
Andreas.
[1] https://salsa.debian.org/med-team/prottest
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http://fam-tille.de
