Bug #1060960 (libslf4j-java: FTBFS: make: *** [debian/rules:4: build] Error 25) is tagged patch but I can't find a patch

2025-04-10 Thread Andreas Tille
Hi, I tried to do some RC bug fixing to help the release and stumbled upon #1060960. It is tagged patch and was forwarded upstream. But I can't find anything like a patch. Is this tag valid in this case? Kind regards Andreas. -- https://fam-tille.de

Bug#1098835: processing-core: Lagging heavily behind upstream - is it better to delete this package?

2025-02-24 Thread Andreas Tille
Source: processing-core Version: 1.2.1-2 Severity: important X-Debbugs-Cc: debian-java@lists.debian.org, Andrew Ross Hi, when fixing Vcs fields I realised that processing-core moved from googlecode to Github which remained undetected due to an outdated watch file. Updating the watch file showe

New version of plexus-cli but I did not managed to get it built

2025-02-23 Thread Andreas Tille
Hi, I've uploaded plexus-cli with fixed metadata. I've also fixed the watch file which lists several new upstream versions. Unfortunately I did not managed to build the latest version as you can see in Salsa CI[1]. If someone might manage to fix this it makes probably sense to have the latest v

Re: trilead-ssh2: Please put javadoc files in their own binary package

2025-02-18 Thread Andreas Tille
Hi, since trilead-ssh2 came up as a candidate for the Bug of the Day[1]. I realised the watch file was outdated and pointed it to Github where a long series of newer releases was tagged. Unfortunately the version string is a bit unfortunate and we might need an epoch most probably. I found some

Re: trilead-ssh2: CVE-2023-48795

2025-02-18 Thread Andreas Tille
Hi, since trilead-ssh2 came up as a candidate for the Bug of the Day[1]. I realised the watch file was outdated and pointed it to Github where a long series of newer releases was tagged. Unfortunately the version string is a bit unfortunate and we might need an epoch most probably. I found some

Bug#1095524: libjgroups-java: New upstream version available

2025-02-08 Thread Andreas Tille
Source: libjgroups-java Version: 2.12.2.Final-5 Severity: normal X-Debbugs-Cc: 867...@bugs.debian.org, debian-java@lists.debian.org Hi, when fixing Vcs fields in libjgroups-java I realised that the Debian packaged version is lagging behind several major upstream versions. It has an open CVE-2016

Bug#1095257: libjaudiotagger-java: New upstream version available

2025-02-05 Thread Andreas Tille
Source: libjaudiotagger-java Version: 2.0.3-3 Severity: normal X-Debbugs-Cc: debian-java@lists.debian.org, Varun Hiremath , Torsten Werner Hi, when upgrading metadata of libjaudiotagger-java and fixing two bugs I noticed there is a new makor upstream version. Since it needs new dependencies I

Bug#1095171: libimglib2-java: New upstream version available

2025-02-04 Thread Andreas Tille
Source: libimglib2-java Version: 4.5.0-1 Severity: normal X-Debbugs-Cc: Ghislain Antony Vaillant , debian-java@lists.debian.org Hi, when trying to update the metadata of libimglib2-java I noticed that Debian is lagging behind upstream several major versions. Since at least one not yet packaged

Bug#1095167: libhibernate-commons-annotations-java: New upstream version available

2025-02-04 Thread Andreas Tille
Source: libhibernate-commons-annotations-java Version: 3.2.0.Final-4 Severity: normal X-Debbugs-Cc: debian-java@lists.debian.org, Torsten Werner , Varun Hiremath Hi, when upgrading the Vcs fields and other packaging metadata of libhibernate-commons-annotations-java I realised that we are laggin

Bug#1095110: kxml2: New upstream version

2025-02-03 Thread Andreas Tille
Source: kxml2 Version: 2.3.0+ds1-2.1 Severity: wishlist X-Debbugs-Cc: Damien Raude-Morvan , Jakub Adam , debian-java@lists.debian.org Hi Jakub, I rnoticed that you have added yourself to Uploaders of kcml2[1]. I just did a team upload with Updated Vcs fields and modernised packaging. You-or som

Salsa repository for eclipse-wtp-j2ee has no packaging at all

2025-02-02 Thread Andreas Tille
Hi, when generating teammetrics I stumbled upon the repository eclipse-wtp-j2ee[1]. It just contains an upstream branch which is fed with commits from 2003 to 2013. I'd suggest some owner could remove this repository since its just consuming space on Salsa. Kind regards Andreas. [1] https

Bug#1095017: knopflerfish-osgi: New upstream version available

2025-02-02 Thread Andreas Tille
Source: knopflerfish-osgi Version: 6.1.1-3.1 Severity: wishlist X-Debbugs-Cc: Felix Natter , debian-java@lists.debian.org Hi, when trying to upgrade the packaging of knopflerfish-osgi I realised there is a new upstream version available. I admit I'm not sure whether there are some incompatibilit

Please clarify status of json-simple

2025-02-01 Thread Andreas Tille
Hi Gilles, the status of json-simple is not clear to me: unstable: 2.3.0-1 exp: 3.1.1-1~exp2 upstream has: 4.0.1 Do you intend to upload at least 3.1.1 to unstable? What is the plan regarding upstream version 4.0.1. How can I help? Kind regards Andreas. -- https://fam-tille

Bug#1094908: jmock: New upstream version available

2025-02-01 Thread Andreas Tille
Source: jmock Version: 1.2.0-5.1 Severity: wishlist X-Debbugs-Cc: debian-java@lists.debian.org Hi, when inspecting jmock to fix Vcs fields I also fixed the watch file and realised Debian is lagging way behind upstream. Since the new version has lots of changes I hesitated to even try upgrading a

Bug#1094847: jhighlight: New upstream version available

2025-01-31 Thread Andreas Tille
Source: jhighlight Version: 1.0-3.1 Severity: normal X-Debbugs-Cc: debian-java@lists.debian.org Hi, when inspecting jhighlight due to missing Vcs fields I realised that the project has moved. I updated the watch file and uploaded the existing package with the current Debian version. After this

Bug#1094799: jeromq: New upstream version available

2025-01-31 Thread Andreas Tille
Source: jeromq Version: 0.3.6-1.1 Severity: wishlist X-Debbugs-Cc: debian-java@lists.debian.org Hi, when working on the jeromq package to fix Vcs fields and upgrading to latest packaging I realised that upstream meanwhile has released some new versions. It seems the packaging of the latest versi

Bug#1094750: jctools: New upstream version available

2025-01-30 Thread Andreas Tille
Source: jctools Version: 2.0.2-1 Severity: normal X-Debbugs-Cc: debian-java@lists.debian.org Hi, I inspected jctools packaging since its Vcs fields needed upgrading and uploaded the package with refreshed metadata. I also tried upgrading to latest upstream (we are lagging behind two major versio

Bug#1094729: java-comment-preprocessor: New upstream version injected into Git - help needed to build

2025-01-30 Thread Andreas Tille
Source: java-comment-preprocessor Version: 6.0.1-1.1 Severity: normal X-Debbugs-Cc: Debian Java List Hi, I had a look into java-comment-preprocessor and at least polished the packaging including setting Vcs fields properly. I also tried to work on the latest upstream version. Unfortunately I d

Bug#1094665: jasmin-sable: New upstream version

2025-01-29 Thread Andreas Tille
Source: jasmin-sable Version: 2.5.0-2 Severity: minor X-Debbugs-Cc: debian-java@lists.debian.org Hi, after polishing the packaging of jasmin-sable (fixing Vcs fields, fix a simple bug etc.) I realised there is a new upstream version. After injecting it into Git I had to confess that my skills in

New upstream version injected into Git - help needed to build

2025-01-29 Thread Andreas Tille
Hi, I had a look into triplea and at least polished the packaging including setting Vcs fields properly. I also tried to work on the latest upstream version which includes fixing the CVE issue. Unfortunately I did not managed to build the package successfully. You can see the build result in Sa

Bug#1094407: htrace: Newer upstream version available (even if project is retired)

2025-01-27 Thread Andreas Tille
Source: htrace Version: 3.1.0-2.1 Severity: minor X-Debbugs-Cc: debian-java@lists.debian.org Hi, I've updated the packaging of htrace and uploaded htrace 3.1.0-3 with an updated watch file. The upstream web page states that the project is retiered but the latest release is way younger as the Deb

Bug#1094396: janino: New upstream version

2025-01-27 Thread Andreas Tille
Source: janino Version: 2.7.0-2.1 Severity: minor X-Debbugs-Cc: debian-java@lists.debian.org Hi, I just uploaded janino 2.7.0-3 with lots of fixes including a fixed watch file. There are lots of new upstream versions issues inbetween and it would probably great to have the latest (or at least so

Could someone make repository https://salsa.debian.org/java-team/liblastfm-java/ publicly visible?

2025-01-24 Thread Andreas Tille
Hi, I realised https://salsa.debian.org/java-team/liblastfm-java/ has visibility set to private. Could some owner please set it to public, please. Kind regards Andreas. -- https://fam-tille.de

Bug#1093868: libajaxtags-java: New version available

2025-01-23 Thread Andreas Tille
Source: libajaxtags-java Version: 1.5.1-3.1 Severity: wishlist X-Debbugs-Cc: Debian Java Maintainers , Torsten Werner , debian-java@lists.debian.org Hi, I have fixed the watch file in my recent upload (1.5.1-4) which shows upstream has 1.5.5. I've injected this into Git but the build needs som

Bug#1093830: jardiff: Should we replace jardiff with some project of the same name but maintained

2025-01-22 Thread Andreas Tille
Source: jardiff Version: 0.2-5.1 Severity: important X-Debbugs-Cc: Debian Java Maintainers , Damien Raude-Morvan , debian-java@lists.debian.org, Package Salvaging Team Hi, I'm currently checking packages in Debian Java team featuring 1. Invalid Vcs fields 2. cdbs to fix the Vcs fields a

Re: Do we need dumbster (very simple fake SMTP Server for testing purposes) in Debian

2025-01-20 Thread Andreas Tille
Hi Julien, Am Mon, Jan 20, 2025 at 03:16:44PM +0100 schrieb Julien Plissonneau Duquène: > According to codesearch it is used in apache-log4j2 test suite, though I > don't know if the test suite or tests that use it are actually run when > building the package. Ahhh, that's a pretty good reason to

Do we need dumbster (very simple fake SMTP Server for testing purposes) in Debian

2025-01-20 Thread Andreas Tille
Hi, the upstream site of dumbster vanished and its not even archived on wayback machine. It never gained any popcon votes (green line)[1] so I wonder whether we need this package in Debian (despite it has no open bugs). If yes, I volunteer to upload it with Vcs fields set to Salsa. Kind regards

Re: codenarc: new upstream version 3.5.0

2025-01-16 Thread Andreas Tille
Control: tags -1 help Thanks Hi, I injected the latest upstream version into Git. Unfortunately there are build errors as you can see in Salsa CI[1] Any help would be welcome Andreas. -- https://fam-tille.de

Re: pomegranate-clojure: FTBFS: make[1]: *** [debian/rules:14: override_dh_auto_test] Error 1

2025-01-16 Thread Andreas Tille
Hi, I tried upstream version 1.2.24 but it fails as well. Sorry, I have no better idea how to fix this but I'm keeping Debian Java List in CC. Kind regards Andreas. -- https://fam-tille.de

New upstream version of felix-framework is blocked by new dependency: libmoditect-java

2025-01-13 Thread Andreas Tille
Control: block -1 by 1092925 Thanks I've filed a RFP bug since the latest version of felix-framework needs moditect but unfortunately I have no capacity to package this. Any volunteer is welcome. The other open bugs of felix-framework are fixed in Git. You can see a build log of the latest upst

Re: Contacting Java packaging team

2024-06-26 Thread Andreas Tille
Hi Emmanuel, Am Tue, Jun 25, 2024 at 11:06:59PM +0200 schrieb Emmanuel Bourg: > > The problems Pierre described with upgrading Gradle might be some > > indication that some more skilled packagers could help. > > We would need a core Gradle and/or Kotlin developer to tackle this issue, > but I don

Re: Contacting Java packaging team

2024-06-16 Thread Andreas Tille
Hi Emmanuel, Am Sun, Jun 16, 2024 at 10:40:02PM +0200 schrieb Emmanuel Bourg: > That's a good idea, thank you. You (all in the Java team) are welcome. I frequently profited from your help. > > I have some specific questions to the Java packaging team. > > > >- Do you feel good when doing

Contacting Java packaging team

2024-06-12 Thread Andreas Tille
Hi, I'd like to officially contact all our teams to learn about potential issues that might affect your work. I would love to learn how you organise / share your workload. If you do some regular meetings - be it on IRC, video conference or whatever I'm interested in joining one of your next meet

Re: libitext5-java: FTBFS with bouncycastle 1.77

2023-12-09 Thread Andreas Tille
Hi, I tried the latest upstream version of libitext5-java and commited the change to Git. Unfortunately the problem persists. Some Debian Med packages are depending from this package so I'd be happy if someone could have a look. You can find the latest log in Salsa CI[1]. Kind regards Andre

Re: beauti2 fails to start

2023-12-07 Thread Andreas Tille
Hi, Am Sun, Dec 18, 2022 at 03:15:28PM +0100 schrieb Pierre Gruet: > Control: tags -1 help > > Hello, > > I tried to investigate further, I feel a window should appear and the action > of the user is expected, yet I don't see anything except the initial > "Initializing BEAUti..." GUI. > My knowl

Re: jblas update to 1.2.5?

2021-12-09 Thread Andreas Tille
Hi Tony and Debian Science Am Thu, Dec 09, 2021 at 09:31:31AM -0800 schrieb tony mancill: > Hello Debian Med, > > jblas (http://jblas.org/) is a Debian Java team package, but I think it > is more appropriate to ask about users here. ... well, better Debian Science IMHO (which I'm keeping in the

Re: May be its rather a "java.io.IOException: No such file or directory" issue (Was: Calling sbt inside d/rules)

2021-05-27 Thread Andreas Tille
Hi Thorsten, On Thu, May 27, 2021 at 05:55:20PM +0200, Thorsten Glaser wrote: > > pbuilder@tglase:~/b/r-cran-epitweetr/java$ sbt -no-share package A, that was helpful! > … is the key to success, at least until… > > [warn] :: > [warn] ::

Re: May be its rather a "java.io.IOException: No such file or directory" issue (Was: Calling sbt inside d/rules)

2021-05-27 Thread Andreas Tille
On Thu, May 27, 2021 at 02:57:41PM +0200, Thorsten Glaser wrote: > On Thu, 27 May 2021, Andreas Tille wrote: > > > I tried again without any clue - may be it is simply some missing > > directory inside pbuilder - but I have no idea which one. :-( > > Shoot into the blue

May be its rather a "java.io.IOException: No such file or directory" issue (Was: Calling sbt inside d/rules)

2021-05-27 Thread Andreas Tille
Hi again, I tried again without any clue - may be it is simply some missing directory inside pbuilder - but I have no idea which one. :-( Any hint would be welcome Andreas. On Tue, May 25, 2021 at 11:29:52AM +0200, Andreas Tille wrote: > Hi, > > the source of r-cran-ep

Calling sbt inside d/rules

2021-05-25 Thread Andreas Tille
Hi, the source of r-cran-epitweetr[1] contains a JAR and the corresponding scala code. I tried to sneak in a sbt call into debian/rules. I tried several different things to at least get sbt running but I always get: java.io.IOException: No such file or directory at java.base/java.io.Uni

Re: Bug#988650: logol: broken symlink: /usr/share/logol/lib/xml-apis.jar -> ../../java/xml-apis.jar

2021-05-17 Thread Andreas Tille
Hi, I'd like to forward this to Debian Java list for comments. Kind regards Andreas. On Mon, May 17, 2021 at 01:50:01PM +0200, olivier sallou wrote: > Issue seems to be related to xml-apis.jar not being symlinked itself > > /usr/share/java# ls *xml-api* > xml-apis-1.4.01.jar xml-apis-ex

Re: No CI/CD settings in packages of Debian Java team?

2021-04-16 Thread Andreas Tille
Hi Emmanuel, On Fri, Apr 16, 2021 at 09:41:11PM +0200, Emmanuel Bourg wrote: > > Is there any good reason for this setting? > > When Salsa was set up we were instructed no to overuse the CI system, I > don't know how this has evolved now. As far as I know this has settled now. > Personally I t

Re: No CI/CD settings in packages of Debian Java team?

2021-04-16 Thread Andreas Tille
Hi Sudip, On Fri, Apr 16, 2021 at 10:48:51AM +0100, Sudip Mukherjee wrote: > > This entry can be found in the menu between Repository and Operations. > > I intended to do this setting for packages (for instance cronometer and > > cdk). However, the whole menu entry is missing. I have no idea why

Re: Packaging OpenRefine

2021-04-16 Thread Andreas Tille
On Fri, Mar 12, 2021 at 08:35:59PM -0500, Olek Wojnar wrote: > > Good news, we came to an agreement to package OpenRefine and to support its > > maintenance for the foreseeable future. I intend to introduce the core > > That looks really exciting, thanks for working on that! I imagine that the > S

No CI/CD settings in packages of Debian Java team?

2021-04-16 Thread Andreas Tille
Hi, in Debian Med we are activating Salsa-CI by adding debian/salsa-ci.yml to all packages and set this in -> Settings -> CI/CD This entry can be found in the menu between Repository and Operations. I intended to do this setting for packages (for instance cronometer and cdk). However, the

Re: Help with libjsonp-java needed

2021-01-17 Thread Andreas Tille
On Sat, Jan 16, 2021 at 10:52:21PM +0100, Pierre Gruet wrote: > > Yes, the issue is the version number of the dependency javax.json-api was > hardcoded in the patch 03-bundle-dependencies -- this thus broke when the > last upstream version was adopted. I have pushed a correction to Salsa. > > To

Help with libjsonp-java needed

2021-01-16 Thread Andreas Tille
Hi, I'm not sure whether this is the right moment to update libjsonp-java but I just stumbled upon it on the "stinks" page[1] and I'd love to make those packages I'm responsible for non-stinky. ;-) Thus I refreshed the packaging in Git[2] but the build time test issue I observed some time ago rem

Salsa repository permissions of gsoc-kotlin-blog

2021-01-09 Thread Andreas Tille
Hi, when I'm running the teammetrics gatherer of team commits I stumbled upon https://salsa.debian.org/java-team/gsoc-kotlin-blog/edit which states that this repository is only visible for project members. Usually repositories should be public. The gatherer will ignore this project as long a

Re: libsis-base-java: unaligned access on armhf

2020-12-02 Thread Andreas Tille
Control: tags -1 help Hi, I wonder whether some Java expert might be able to clarify the situation in bug #929530. Any help would be appreciated Andreas. -- http://fam-tille.de

Re: [RFS] libapfloat-java

2020-11-09 Thread Andreas Tille
Hi, On Tue, Nov 03, 2020 at 10:30:23AM +0100, Pierre Gruet wrote: > > There is a minor mistake with the email address of the Java team in > > debian/control: > > > > pkg-java-maintain...@alioth-lists.debian.net > > > > should be replaced by: > > > > pkg-java-maintain...@lists.alioth.deb

Re: Bug#973070: libsis-base-java: FTBFS: Could not delete the directory targets/unit-test-wd/ch.syst

2020-10-29 Thread Andreas Tille
Hi, here is a suggested patch for commons-io that would prevent making the test in libsis-base-java fail. Kind regards Andreas. - Forwarded message from Bernd Rinn - Date: Wed, 28 Oct 2020 21:40:29 +0100 From: Bernd Rinn To: Andreas Tille CC: 973...@bugs.debian.org Subject

Re: Help needed: Bug#973070: libsis-base-java: FTBFS: Could not delete the directory targets/unit-test-wd/ch.systemsx.cisd.base.unix.UnixTests because: 1 exceptions: [java.io.IOException: Unable to de

2020-10-28 Thread Andreas Tille
Hi, On Tue, Oct 27, 2020 at 10:55:43PM +0100, Markus Koschany wrote: > This appears to be caused by the recent upgrade of Apache commons-io to > version 2.8.0 (we had 2.6), see also #973135. In version 2.7 they > removed a throws IOException in the method isSymlink() > > https://issues.apache.org

Help needed: Bug#973070: libsis-base-java: FTBFS: Could not delete the directory targets/unit-test-wd/ch.systemsx.cisd.base.unix.UnixTests because: 1 exceptions: [java.io.IOException: Unable to delete

2020-10-27 Thread Andreas Tille
Control: tags -1 help Hi, I checked out the latest upstream commit and pushed it to Salsa. Its the same with this. Any idea why this test has worked before but is failing now? Kind regards Andreas. On Tue, Oct 27, 2020 at 06:06:55PM +0100, Lucas Nussbaum wrote: > Source: libsis-base-jav

Re: [RFS] libreflections-java

2020-09-11 Thread Andreas Tille
Hi Pierre, On Wed, Sep 02, 2020 at 12:32:49PM +0200, Pierre Gruet wrote: > > > > in the source package. While its definitely primitive and just contains > > "pack/empty.class" as binary content my bet is ftpmaster will stumble > > upon this. > > > > What do you think? > > > > Thanks for lookin

Re: src:cgview: fails to migrate to testing for too long: autopkgtest failure

2020-09-09 Thread Andreas Tille
Control: tags -1 help Hi, I wonder why this ... autopkgtest [16:10:05]: test run-unit-test: [--- [warning] /usr/bin/cgview: No java runtime was found autopkgtest [16:10:06]: test run-unit-test: ---] autopkgtest [16:10:06]: test run-unit-test: - - - - - -

Re: [RFS] libreflections-java

2020-09-02 Thread Andreas Tille
Hi Pierre, On Sat, Aug 29, 2020 at 01:22:41PM +0200, Pierre Gruet wrote: > I have worked on the initial packaging of libreflections-java, which > lies in the Salsa repository > > https://salsa.debian.org/java-team/libreflections-java > > Could someone please review and sponsor it when time permi

Re: [RFS] libdsiutils-java

2020-09-02 Thread Andreas Tille
Hi Pierre, On Sat, Aug 29, 2020 at 12:46:22PM +0200, Pierre Gruet wrote: > Hi, > > I have worked on the initial packaging of libdsiutils-java, which lies > in the Salsa repository > > https://salsa.debian.org/java-team/libdsiutils-java > > Could someone please review and sponsor it when time pe

Re: jimfs: FTBFS: [ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:3.8.1:compile (default-compile) on project jimfs: Compilation failure

2020-08-08 Thread Andreas Tille
On Sat, Aug 08, 2020 at 12:07:17AM +0200, Thorsten Glaser wrote: > > Gimme a bit, I’ll build it locally, now I found the Debian packaging. > > Heh, it was as easy as build targetting Java 8… patch and log attached. Ahhh, that was simple. :-) Thanks a lot. BTW, I'd consider it more straightforwar

Re: jimfs: FTBFS: [ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:3.8.1:compile (default-compile) on project jimfs: Compilation failure

2020-08-07 Thread Andreas Tille
Hi Thorsten, On Thu, Aug 06, 2020 at 04:04:22PM +0200, Thorsten Glaser wrote: > On Thu, 6 Aug 2020, Andreas Tille wrote: > > > [ERROR] > > /build/jimfs-1.1/jimfs/src/main/java/com/google/common/jimfs/PathService.java:[290,30] > > error: is not abstract > >

Re: jimfs: FTBFS: [ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:3.8.1:compile (default-compile) on project jimfs: Compilation failure

2020-08-06 Thread Andreas Tille
Control: tags -1 help Hi, I was running routine-update on jimfs repository since it seems to lack some love (not even Salsa URLs in VCS-fields) but the build error remains (for sure since I did not changed the code). I've checked upstream[1] which says: 1.1 @cgdecker released this on Feb 1

Re: [Help] Re: Bug#966878: figtree: FTBFS: [javac] /<>/src/figtree/application/JSONTreeExporter.java:56: error: JSONTreeExporter is not abstract and does not override abstract method clos

2020-08-05 Thread Andreas Tille
Uploaded. Thanks a lot, Andreas. On Mon, Aug 03, 2020 at 01:29:28PM +0100, Sudip Mukherjee wrote: > Hi Andreas, > > On Mon, Aug 3, 2020 at 10:25 AM Andreas Tille wrote: > > > > Control: tags -1 help > > > > Hi Java team > > > > I admit I have n

[Help] Re: Bug#966878: figtree: FTBFS: [javac] /<>/src/figtree/application/JSONTreeExporter.java:56: error: JSONTreeExporter is not abstract and does not override abstract method close()

2020-08-03 Thread Andreas Tille
Control: tags -1 help Hi Java team I admit I have no idea how to tackle this. Any help would be really appreciated. Kind regards Andreas. On Mon, Aug 03, 2020 at 10:01:35AM +0200, Lucas Nussbaum wrote: > Source: figtree > Version: 1.4.4-4 > Severity: serious > Justification: FTBFS on a

Re: Building r-cran-rcdk with cdk [Was: Re: Upgrading freehep to latest upstream (needed by cdk and probably others)]

2020-07-29 Thread Andreas Tille
Hi Tony & Andrius, On Wed, Jul 29, 2020 at 09:18:52AM +0300, mer...@debian.org wrote: > > [1] https://salsa.debian.org/java-team/cdk/-/merge_requests/4 > > The MR looks good to me. Thanks a lot for you both working on it. > I posted a tiny suggestion to depend on > jgrapht0.6 with a version to

Re: Upgrading freehep to latest upstream (needed by cdk and probably others)

2020-07-26 Thread Andreas Tille
Hi Andrius, On Fri, Jul 24, 2020 at 08:11:29AM +0300, mer...@debian.org wrote: > On 2020-07-23 17:55, Andreas Tille wrote: > > Would you mind to update cdk package (which was the original issue > > I stumbled upon freehep)? > > I have updated cdk yesterday. The cdk-depic

Re: RFS : libcharts4j-java

2020-07-26 Thread Andreas Tille
Hi Emmanuel, On Sat, Jul 25, 2020 at 11:36:08PM +0200, Emmanuel Bourg wrote: > On 25/07/2020 08:39, Emmanuel Bourg wrote: > > >> Could someone please review and sponsor it when time permits? > > > > Hi Pierre, I'll take care of it. > > The package has been uploaded and is now in the NEW queue.

Re: Upgrading freehep to latest upstream (needed by cdk and probably others)

2020-07-23 Thread Andreas Tille
Hi Andrius, On Thu, Jul 23, 2020 at 04:42:20PM +0300, mer...@debian.org wrote: > Hello, > > On 2020-07-22 22:00, Giovanni Mascellani wrote: > > Thanks, I just pushed geogebra. > > Thanks! Would you mind to update cdk package (which was the original issue I stumbled upon freehep)? Kind regards

Help for package sepp needed: error: incompatible types: JSONArray cannot be converted to Collection

2020-07-22 Thread Andreas Tille
Hi, the Debian Med team wants to package sepp[1] as a COVID-19 relevant package. It contains some Java code which fails to build with: ... [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] /build/sepp-4.3.10+dfsg/tools/merge/src/edu/ri

Help with oncofuse needed

2020-07-22 Thread Andreas Tille
Hi, I had a look at oncofuse[1] again. The new version now has a different reason to fail - hopefully it is easier to fix: ... [INFO] Scanning for projects... [INFO] [INFO] --< es.unav:oncofuse >-- [INFO] Building oncofuse 1.1.1 [INFO] --

Re: Upgrading freehep to latest upstream (needed by cdk and probably others)

2020-07-15 Thread Andreas Tille
On Fri, Jul 10, 2020 at 04:06:03PM +0300, mer...@debian.org wrote: > On 2020-07-10 15:59, Giovanni Mascellani wrote: > > Great, then I revoke the intention of RMing geogebra and close the > > corresponding bug. As soon as freehep-vectographics is available, I will > > bump patches and dependencies

Re: Upgrading freehep to latest upstream (needed by cdk and probably others)

2020-07-01 Thread Andreas Tille
Hi Andrius, On Wed, Jul 01, 2020 at 11:09:54AM +0300, mer...@debian.org wrote: > > https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=964070 > > Thanks a lot for the information. I have uploaded freehep-vectorgraphics > to experimental, waiting for it to clear NEW. Thanks for this. I've added

Re: Bug#959829: [covid-19] Help needed to finalise bazel predependency google-api-client-java

2020-06-17 Thread Andreas Tille
Hi, On Wed, Jun 17, 2020 at 02:12:09PM -0400, Olek Wojnar wrote: > > That was easy. I have pushed my changes to "sudip" which now builds > > only those two. > > Great, thanks! Yep. > Good catch, thanks! The repo should be named google-api-client-java for > consistency with the rest of the ecos

Re: Bug#959829: [covid-19] Help needed to finalise bazel predependency google-api-client-java

2020-06-17 Thread Andreas Tille
Hi Sudip, On Wed, Jun 17, 2020 at 11:42:52AM +0100, Sudip Mukherjee wrote: > > I have taken the liberty to push to "tmancill" branch and the issue As I tried to express: I wished you all would take the freedom to simply push to the master branch which is perfectly fine for me. ;-) Thanks a lot

Re: Bug#959829: [covid-19] Help needed to finalise bazel predependency google-api-client-java

2020-06-17 Thread Andreas Tille
Hi Tony, On Tue, Jun 16, 2020 at 09:34:20PM -0700, tony mancill wrote: > > I've pushed a "tmancill" branch to the Salsa repo that gets us further > along. Thanks a lot for your great help. I've merged your branch to master. Feel free to push right to master in future since I feel unable to do a

Re: Bug#959829: [covid-19] Help needed to finalise bazel predependency google-api-client-java

2020-06-16 Thread Andreas Tille
Hi Olek, On Tue, Jun 16, 2020 at 05:01:37AM -0400, Olek Wojnar wrote: > > Good question! Due to some dependency issues, the bom artifacts are not > packaged. OK, that explains the issue ... > But you should be able to just depend on the non-bom pom files. ... but I'm to uneducated to implement

[covid-19] Help needed to finalise bazel predependency google-api-client-java

2020-06-16 Thread Andreas Tille
Hi, I have injected some preliminary packaging for google-api-client-java into salsa[1]. When trying to build I get: ... dh_auto_build /usr/lib/jvm/default-java/bin/java -noverify -cp /usr/share/maven/boot/plexus-classworlds-2.x.jar -Dmaven.home=/usr/share/maven -Dmaven.multiModule

Re: Issue about mutual dependencies for aparapi

2020-06-04 Thread Andreas Tille
[add debian-java to CC] Hi Pierre, thanks a lot for your continuous work to get snpeff packaged finally. This is extremely welcome. On Thu, Jun 04, 2020 at 05:49:23PM +0200, Pierre Gruet wrote: > Hello everyone, > > I am currently beginning packaging aparapi, which is a Java API to > execute Ja

ITP: google-http-client-java -- Google HTTP Client Library for Java

2020-06-01 Thread Andreas Tille
Control: retitle -1 ITP: google-http-client-java -- Google HTTP Client Library for Java Control: owner -1 Andreas Tille Control: tags -1 help Hi, in the COVID-19 sprint of Debian Med we spotted the bazel packaging system as important target to finally get tensorflow packaged for Debian. The

Help needed to create jar in maven project (auto-common - predependency for bazel)

2020-05-29 Thread Andreas Tille
Hi Java team, I'm working together with Olek to get all predependencies for bazel which will finally enable us to build tensorflow for Debian. We both have no clue to build a jar in the following project: On Fri, May 29, 2020 at 12:54:52PM -0400, Olek Wojnar wrote: > > I've been having problems

Re: Help to detect java classes in drop-seq (covid-19 relevant) needed

2020-05-21 Thread Andreas Tille
Hi, On Wed, May 20, 2020 at 10:07:48PM +0200, Andreas Tille wrote: > > Thanks. This was pretty helpful. Now I need to package the > remaining JAR which is not yet packaged from > >http://la4j.org/ I made some progress and also uploaded libla4j-java[1] to new. With this I

Re: Help to detect java classes in drop-seq (covid-19 relevant) needed

2020-05-20 Thread Andreas Tille
HI Felix, On Wed, May 20, 2020 at 06:12:54PM +0200, Felix Natter wrote: > > Since the upstream jars were in ${lib}, you need to point ${lib} to > /usr/share/java/: > > diff --git a/debian/patches/debian_packaged_libs.patch > b/debian/patches/debian_packaged_libs.patch > index 1d3790c..4fc1ed9

Help to detect java classes in drop-seq (covid-19 relevant) needed

2020-05-20 Thread Andreas Tille
Hi, I've started packaging of drop-seq[1] and replaced those JARs that are replacable by Debian packaged versions. I also have set CLASS_PATH in d/rules, but it seems to be ignored. I have dealt with similar cases by patching it into build.xml but here I have not found the relevant place to do s

Re: Maven packages in Debian (was Re: Progress in preparing the Bazel Build System for Debian (COVID-19 Biohackathon follow-up))

2020-05-13 Thread Andreas Tille
On Wed, May 13, 2020 at 08:33:07PM +0200, Thorsten Glaser wrote: > > I remember times when such a web page (actually some autogenerated text > > file) existed which was **extremely** helpful. I wished this would be > > back! > > > > > … I just volunteerd, didn’t I? > > Here you are: > > https://

ITP: opencensus-java -- Stats collection and distributed tracing framework

2020-05-12 Thread Andreas Tille
Control: retitle -1 ITP: opencensus-java -- Stats collection and distributed tracing framework Control: owner -1 Andreas Tille Control: tags -1 help I've started packaging in https://salsa.debian.org/java-team/opencensus-java to support bazel packaging. Unfortunately I have no idea h

Re: Packaging libsis-jhdf5-java -- help needed

2020-05-06 Thread Andreas Tille
Hi Pierre, On Fri, May 01, 2020 at 07:48:14AM +0200, Pierre Gruet wrote: > > I was planning to consider a full refresh of debian/rules, including > dh_auto_clean. Since I realised your changelog that all tests are passing I decided to upload the current status in Git. That's really great work s

Re: Progress in preparing the Bazel Build System for Debian (COVID-19 Biohackathon follow-up)

2020-05-06 Thread Andreas Tille
Hi Thorsten, On Wed, May 06, 2020 at 05:15:04PM +0200, Thorsten Glaser wrote: > > Provides or something to make it clear? I saw changes to packages adding > > Or perhaps we need a webpage or wiki page generated by parsing the > Contents file and listing the matching Debian package for each class

Re: [covid-19] Gradle help for nextflow needed

2020-04-30 Thread Andreas Tille
On Thu, Apr 30, 2020 at 01:10:34PM +0200, Andreas Tille wrote: > For the moment I did this. I delay the hint for the gradle dependencies > given by Benedict in the other mail since for the moment I think I have > spotted a real dependency that needs to be packaged: > > A p

Re: [covid-19] Gradle help for nextflow needed

2020-04-30 Thread Andreas Tille
Hi Andrius and Benedict, thanks to you both for your answers! On Thu, Apr 30, 2020 at 06:01:45AM +0300, mer...@debian.org wrote: > > 8< > plugins { >     id "io.codearte.nexus-staging" version "0.21.2" > } > 8<--

Re: Packaging libsis-jhdf5-java -- help needed

2020-04-29 Thread Andreas Tille
Hi Gilles, On Wed, Apr 29, 2020 at 05:10:38PM +0200, Gilles Filippini wrote: > > I've cloned the git repo and attempted a build. But the dh_auto_test > part doesn't execute any test actually: > >debian/rules override_dh_auto_test > make[1]: Entering directory > ... >

Re: Packaging libsis-jhdf5-java -- help needed

2020-04-29 Thread Andreas Tille
Hi Pierre, On Tue, Apr 28, 2020 at 10:40:31PM +0200, Pierre Gruet wrote: > Hi everyone, > > I have been trying to package libsis-jhdf5-java, after Andreas imported the > last upstream version. > This package builds a java package with a .jar file and a jni package with > native code used by the .

[covid-19] Gradle help for nextflow needed

2020-04-28 Thread Andreas Tille
Hi, in our COVID-19 effort the Debian Med team intends to package some workflows that are useful to detect viruses. A common workflow tool is nextflow which I in injected into Salsa[1]. The build system uses gradle where I do not have any experience in. The build log of my weak attempt is runni

Re: Changes to get tomcat8 security fixes into Debian 9?

2020-04-28 Thread Andreas Tille
On Fri, Mar 06, 2020 at 03:17:09PM +0100, Andreas Tille wrote: > On Fri, Mar 06, 2020 at 12:24:56AM +0100, Markus Koschany wrote: > > Hi Andreas, > > > > Am 05.03.20 um 09:34 schrieb Andreas Tille: > > > Hi, > > > > > > I was wondering, whether

Re: Upgrading freehep to latest upstream (needed by cdk and probably others)

2020-04-28 Thread Andreas Tille
Hi Andrius, thanks a lot for your work on this - also thanks to Giovanni for your comments. I'd be really happy to get FreeHEP updated. Kind regards Andreas. On Fri, Apr 24, 2020 at 08:03:20AM +0300, mer...@debian.org wrote: > Hello, > > On 2020-04-21 10:40, Giovanni Mascellani wrote: >

Re: Upgrading freehep to latest upstream (needed by cdk and probably others)

2020-04-20 Thread Andreas Tille
Hi Andrius, On Sat, Apr 18, 2020 at 10:18:04AM +0300, mer...@debian.org wrote: > Some time ago I had attempted packaging new freehep-vectorgraphics, with > considerable success. However, I dropped the ball and did not upload it. > I have pushed my packaging to salsa [1]. Thanks a lot for the prom

Upgrading freehep to latest upstream (needed by cdk and probably others)

2020-04-15 Thread Andreas Tille
Hi, I was digging through CDK to get the R interface running (see my other mails here on this list). I just found another clue that cdk-depict is missing. When inspecting cdk source I've found: libcdk-java.poms:# depict requires freehep-graphicsio-* 2.4 (Debian has older) This made me wonder

Re: Help needed for calling Java class from R

2020-04-15 Thread Andreas Tille
Hi again, On Tue, Apr 14, 2020 at 10:50:28PM +0200, Andreas Tille wrote: > 1 Test Suite : > rcdk rcdk Unit Tests - 31 test functions, 31 errors, 0 failures > ERROR in test.charges: Error in > .jnew("org/openscience/cdk/smiles/SmilesParser", g

Re: Help needed for calling Java class from R

2020-04-14 Thread Andreas Tille
Hi Florian, On Tue, Apr 14, 2020 at 08:49:44PM +0200, Florian Weimer wrote: > > Meh. Does R have exceptions? It would be nice to translate the > underlying exception from > > if (clnam) > cls = findClass(env, clnam, oClassLoader); > else > cls = objectClass(env,o); > if (!cls) >

Re: Help needed for calling Java class from R

2020-04-14 Thread Andreas Tille
On Tue, Apr 14, 2020 at 06:52:56PM +0200, Florian Weimer wrote: > * Andreas Tille: > > ERROR: loading failed > > * removing > > '/build/r-cran-rcdk-3.5.0/debian/r-cran-rcdk/usr/lib/R/site-library/rcdk' > > dh_auto_install: error: R CMD INSTALL -l > >

Help needed for calling Java class from R

2020-04-14 Thread Andreas Tille
Hi, in the COVID-19 packaging effort I need r-cran-rcdk as a predependency. I have injected it into r-pkg-team Git[1]. It is using the rjava interface and depends from r-cran-rcdklibs (which has a dependency from libcdk-java). When I try to build I get: ** installing vignettes ** testing if ins

Re: Changes to get tomcat8 security fixes into Debian 9?

2020-03-06 Thread Andreas Tille
On Fri, Mar 06, 2020 at 12:24:56AM +0100, Markus Koschany wrote: > Hi Andreas, > > Am 05.03.20 um 09:34 schrieb Andreas Tille: > > Hi, > > > > I was wondering, whether there is a chance to get CVE-2020-1938 fixed in > > Tomcat8 in Stretch? If the chances are

Changes to get tomcat8 security fixes into Debian 9?

2020-03-05 Thread Andreas Tille
Hi, I was wondering, whether there is a chance to get CVE-2020-1938 fixed in Tomcat8 in Stretch? If the chances are low possibly backporting Tomcat9 to stretch-backports-sloppy would be a feasible way to go for me. What would you recomment? Kind regards Andreas. -- http://fam-tille.de

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