Hi,
the Debian Med team wants to package sepp[1] as a COVID-19 relevant
package. It contains some Java code which fails to build with:
...
[javac] warning: [options] To suppress warnings about obsolete options, use
-Xlint:-options.
[javac]
/build/sepp-4.3.10+dfsg/tools/merge/src/edu/rice/cs/bioinfo/programs/phylonet/structs/tree/util/Trees.java:32:
warning: SunGraphicsEnvironment is internal proprietary API and may be removed
in a future release
[javac] import sun.java2d.SunGraphicsEnvironment;
[javac] ^
[javac]
/build/sepp-4.3.10+dfsg/tools/merge/src/phylolab/taxonamic/JSONMerger.java:391:
error: incompatible types: JSONArray cannot be converted to Collection<?
extends JSONArray>
[javac] sortedPlacements.addAll(placements);
[javac] ^
[javac]
/build/sepp-4.3.10+dfsg/tools/merge/src/phylolab/taxonamic/JSONMerger.java:562:
error: incompatible types: JSONArray cannot be converted to Collection<?
extends JSONObject>
[javac] sortedPlacements.addAll(resultsPlacements);
[javac] ^
[javac]
/build/sepp-4.3.10+dfsg/tools/merge/src/phylolab/taxonamic/PPlacerJSONMerger.java:315:
error: incompatible types: JSONArray cannot be converted to Collection<?
extends JSONObject>
[javac] sortedPlacements.addAll(resultsPlacements);
[javac] ^
[javac] Note: Some input files use or override a deprecated API.
...
Any help for the "incompatible types" types issue? I'm also wondering
how serious I should take the "SunGraphicsEnvironment is internal
proprietary API" issue.
Kind regards
Andreas.
[1] https://salsa.debian.org/med-team/sepp
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