Re: [ccp4bb] Coot 1.1 General Tools

2024-06-03 Thread lucrezia catapano
atom’ on the right vertical toolbar, then ‘Fix atom’, and an ‘anchor’ marker will appear. Then it should work. Regards Lucrezia Lucrezia Catapano Postdoctoral Scientist, Murshudov Group MRC Laboratory of Molecular Biology Francis Crick Avenue, Cambridge CB2 0QH, UK. lucre...@mrc-lmb.cam.

[ccp4bb] Neutron Refinement Documentation Now Available

2025-02-07 Thread lucrezia catapano
available in the next CCP4 update. These options will also be accessible in CCP4Cloud soon. If you try the tool and encounter any issues, please feel free to report them to me. Best regards, Lucrezia Lucrezia Catapano, PhD (she/her) Postdoctoral Scientist, Murshudov Group MRC Laboratory of

Re: [ccp4bb] X-ray/neutron CIFs/MTZs

2025-02-24 Thread lucrezia catapano
ption when no other information is available. If you need to extract data arrays from a combined sf.cif file, you can easily do so using gemmi: gemmi cif2mtz -B 2 file-sf.cif file.mtz Here, -B 2 specifies the second block in the file. Hope helps. Lucrezia Lucrezia Catapano, PhD (she/her) Po

Re: [ccp4bb] Help with preparation of the ligand coordinates/restraints needed

2022-06-06 Thread Lucrezia Catapano - MRC LMB
ued to members of www.jiscmail.ac.uk/CCP4BB, a mailing > list hosted by www.jiscmail.ac.uk, terms & conditions are available at > https://www.jiscmail.ac.uk/policyandsecurity/ > Lucrezia Catapano PhD student Murshudov Group MRC Laboratory of Molecular Biology Francis Crick Avenue Cambridge CB2 0Q

Re: [ccp4bb] Question about CCP4 monomer dictionaries

2022-11-28 Thread Lucrezia Catapano MRC-LMB
Dear Stephen, The current monomer library is, for the most part, generated by running AceDRG - for non-metal containing entries at least. AceDRG [1,2] derives atom types using the cif files in the Crystallography Open Database [3], not the CSD. You can see which version of Acedrg has been using

Re: [ccp4bb] COOT 1.0 not showing content on MacOS

2023-01-26 Thread Lucrezia Catapano MRC-LMB
Hi Cheng, this a problem related to gtk+3 installation. There is a workaround to solve the issue. You need to install a previous version of gtk+3. All the instructions are here: https://github.com/pemsley/coot/issues/33#issuecomment-1374409909 Bw, Lucrezia On 2023-01-25 15:53, Cheng Zhang wr

Re: [ccp4bb] Modelling ssDNA in COOT

2025-03-05 Thread Lucrezia Catapano MRC-LMB
and then you add the residue. Hope helps. Best, Lucrezia Lucrezia Catapano, PhD (she/her) Postdoctoral Scientist, Murshudov Group MRC Laboratory of Molecular Biology Francis Crick Avenue, Cambridge CB2 0QH, UK. lucre...@mrc-lmb.cam.ac.uk > On 5 Mar 2025, at 03:57, Marco Br