[ccp4bb] I-TASSER predicts NADPH binding, need to confirm with experiment

2010-08-04 Thread Xuan Yang
Dear All, 3D structure modeling server I-TASSER predicts a binding site for NADPH and I want to test this prediction. What would be the nice quick way to tell whether this protein bind NADPH or not, when I have a lot of recombinant protein? Sincerely, Xuan Yang

Re: [ccp4bb] I-TASSER predicts NADPH binding, need to confirm with experiment

2010-08-04 Thread Xuan Yang
Dear Jacob, Nanodrop ultrafiltration sounds really fancy to me. I am afraid that I have no access to such equipment yet. Thanks for letting me know about this new technology. Sincerely, Xuan Yang 2010/8/4 Jacob Keller > I like nanodrop ultrafiltration: > > concentrate your prote

Re: [ccp4bb] I-TASSER predicts NADPH binding, need to confirm with experiment

2010-08-04 Thread Xuan Yang
alaria Research Institute > 615 North Wolfe Street, W8708 > Baltimore, MD 21205 > Phone: +1-410-614-4742 > Lab: +1-410-614-4894 > Fax: +1-410-955-3655 > http://web.mac.com/bosch_lab/ > > On Aug 4, 2010, at 4:10, Xuan Yang wrote: > > > Dear All, > > >

[ccp4bb] Zinc or Iron binding protein, that is a question!

2009-08-05 Thread Xuan Yang
). However, considering the instability of Fe(II) in solution, the design still seemed problematic. Sincerely, Xuan Yang National Laboratory of Biomacromolecules and Center for Infection and Immunity, Institute of Biophysics, Chinese Academy of Sciences, Room 1617, 15 DaTun Road,Chaoyang District

Re: [ccp4bb] Zinc or Iron binding protein, that is a question!

2009-08-06 Thread Xuan Yang
stoichiometry increaed to 1:1 in the C-terminal part. The result lead me to focus on Zn instead of Fe. But I still want to confirm the idea. Matallo biochemistry was exactly what I dreamed to do. Sincerely, Xuan Yang 2007/8/6 Guenter Fritz > Hi Xuan, > I guess your protein is not an E.coli p

Re: [ccp4bb] Zinc or Iron binding protein, that is a question!

2009-08-09 Thread Xuan Yang
s? > >> > >> Specifically, now I want to compare the binding efficiency on various > >> IMAC, i.e. 50mM ZnSO4, FeSO4, Fe2(SO4)3, NiSO4(control), or > >> CuSO4(control). However, considering the instability of Fe(II) in > >> solution, the design still see

Re: [ccp4bb] Active aggregates?

2009-08-29 Thread Xuan Yang
! Sincerely, Xuan Yang 2009/8/27 James Stroud > Just try crystallizing it. What is a crystal but a "massive aggregate"? > That they are still soluble and active is great news. > > As a grad student, I had a similar phenomenon with an early project. I > showed a gel in group me

Re: [ccp4bb] Active aggregates?

2009-08-29 Thread Xuan Yang
crease the solubiltiy and homogeneity, whichmight be helpful too. Good luck! Xuan Yang 2009/8/27 ose toyoyuki > > Dear all, > > This is a question on how to cope with the protein that seems to form > massive aggregates in solution but enzymatically active. > > I'm wo

[ccp4bb] Devices Suitable to Concentrate Protein Solutions in Liter Scale

2009-09-03 Thread Xuan Yang
Dear All, I am working on protein refolding via dialysis in large volumn (typically 2~4 litters). It was problematic when I wanted to concentrate the solution to at least less than 500ml. If you know any device appropriate for such task, please help me out:) Thanks in advance! Sincerely, Xuan

Re: [ccp4bb] Devices Suitable to Concentrate Protein Solutions in Liter Scale

2009-09-03 Thread Xuan Yang
Dear Dr Ku, It was a wonderful idea! However, the refolding buffer contained 500mM L-Arg and 1mM EDTA. And I want to try other affinity columns, just don't know what resin would be appropriate. Sincerely, Xuan Yang 2009/9/3 Shao-Yang Ku > Can you put a 6His-tag on your protein and

[ccp4bb] A new detector for my HKL2000 package

2013-04-23 Thread Xuan Yang
Dear all, I have collected a dataset on a Saturn 944HG CCD detector, and I want to process the data on HKL2000. The detector is not found in the list of the HKL2000 pop-up window in the beginning, what should I do to make the HKL2000 package recognize my dataset? I'm a computer dummy, so would y