Re: [ccp4bb] XDS with CCP4i/XIA2

2010-01-20 Thread Nobuo OKAZAKI
x27;December 28, 2009'] It will make XIA2 working well. Nobuo OKAZAKI > Dear all, > > I am trying to process some data. When I try to run XDS through XIA2/CCP4i, > it gives an error message was descrived as below. > > Status: error "XDS version "December 28, 2009&

[ccp4bb] Setting default PDB viewer to PyMOL in CCP4i

2010-03-08 Thread Nobuo OKAZAKI
ease check this patch. # Apologies in solution if this is already-answered question. Thanks. Nobuo OKAZAKI

[ccp4bb] cbuccanner.exam failed with libFFTW generated by Intel MKL

2009-01-22 Thread Nobuo OKAZAKI
% setenv COPTIM "-O -ip" % setenv FFTW_LIBS "-lfftw2xc_intel -lmkl -liomp5 -lguide -lpthread" % setenv FFTW_CXXFLAGS "-I/opt/intel/Compiler/11.0/074/mkl/include/fftw" % ./install.sh (building x-windows programs - no) (building fftw library - no) Any suggestions? Thanks, Nobuo OKAZAKI

Re: [ccp4bb] cbuccanner.exam failed with libFFTW generated by Intel MKL

2009-01-23 Thread Nobuo OKAZAKI
rnder how much contributes with MKL's FFT library. Nobuo OKAZAKI Bill wrote: > I should let the experts answer definitively, but I think this might > be because the clipper-related stuff (and coot) need single-precision > s[r]fftw libraries. > > I had to do something lik

Re: [ccp4bb] cbuccanner.exam failed with libFFTW generated by Intel MKL

2009-01-25 Thread Nobuo OKAZAKI
d LgLkGain : 0.694419nan Biased Free LgLkGain: 0 0 Thanks, Nobuo OKAZAKI Kevin Cowtan wrote: > OK, I had a closer look at this. > > Buccaneer is failing because it can't grow a single residue of chain > from the seed positions. This can only happen

Re: [ccp4bb] cbuccanner.exam failed with libFFTW generated by Intel MKL

2009-01-25 Thread Nobuo OKAZAKI
9 153: 199 153 < HKL = ( 2, 2, 2) 200 360:8.33 360: 200 360 (gcc) > HKL = ( 2, 2, 0) 198 306: 198 306: 198 306 > HKL = ( 2, 2, 1) 199 153: 199 153: 199 153 > HKL = ( 2, 2, 2) 200 360: 200 360: 200 360 It suggested CLIPPER with Intel-FFT is n

[ccp4bb] Error in Edit Job Data on CCP4i

2009-04-14 Thread Nobuo OKAZAKI
t;uplevel" body line 1) invoked from within "uplevel #0 [list $w invoke active]" (procedure "tk::MenuInvoke" line 50) invoked from within "tk::MenuInvoke .module.right.dbmenu.canvas.frame.f.f_6.m1 1" (command bound to event) Thanks, Nobuo OKAZAKI, Japan Atomic Energy Agency

Re: [ccp4bb] Error in Edit Job Data on CCP4i

2009-04-14 Thread Nobuo OKAZAKI
project directory. > > I think this line caused the error. But it seems no syntax error... > INPUT_FILES_DIR,2 "M2 {Full path..}" Thanks, Nobuo OKAZAKI Japan Atomic Energy Agency

[ccp4bb] NOBUGS2014 Announcement

2014-08-07 Thread Nobuo OKAZAKI
Dear Colleague, NOBUGS 2014 Announcement The 10th NOBUGS (New Opportunities for Better User Group Software) conference 24th to 26th September 2014 at KEK, Tsukuba, Japan. NOBUGS which is an international meeting aims to serve as an opportunity to exchange opinions with software at facilities. Fu