Dear all, I tried to build CCP4 6.1 with Intel Compiler & Intel Math Kernel Library(MKL) on Fedora 8. I used MKL as LAPACK and FFTW libraries. The building processes have been completed successfully, but all tests passed except cbuccaneer.exam (core dumped).
Log: --- % ./cbuccaneer.exam or "make runtest" (snip.) Cycle: 1 C-alphas after finding: 5 C-alphas after growing: 5 ./cbuccaneer.exam: line 12: 23479 Aborted cbuccaneer -mtzin-ref $CLIBD/reference_structures/reference-1tqw.mtz -pdbin-ref $CLIBD/reference_structures/reference-1tqw.pdb -mtzin-wrk $CCP4_SCR/toxd_phase_mir_pirate1.mtz -pdbout-wrk $CCP4_SCR/toxd_phase_mir.pdb -colin-wrk-fo '/NATIVE/NATIVE/[FTOXD3,SIGFTOXD3]' -colin-wrk-hl '/*/*/[pirate.ABCD.A,pirate.ABCD.B,pirate.ABCD.C,pirate.ABCD.D]' -find -grow -join -link -prune (core dumped) ------------- In case of compiling with Intel Compiler and default fftw libraries (bundled by CCP4), building and all test processes passed. Building process: % mkdir ccp4-intel % cd ccp4-intel % tar xvf CCP4-6.1.0.src.tar (CCP4 core source package) % setenv XLDFLAGS "-lmkl -liomp5 -lguide" % setenv COPTIM "-O -ip" % setenv FFTW_LIBS "-lfftw2xc_intel -lmkl -liomp5 -lguide -lpthread" % setenv FFTW_CXXFLAGS "-I/opt/intel/Compiler/11.0/074/mkl/include/fftw" % ./install.sh (building x-windows programs - no) (building fftw library - no) Any suggestions? Thanks, Nobuo OKAZAKI
