Dear Kevin, Thanks for your advice. I compared cpirate.exam log between pre-built and intel-FFT linked. the log values seems distinctly different.
Maps with pre-build MLPHARE and intel-FFT don't seem so different. So, I tried the comparison using phase which estimated by pre-build mlphare.exam. However, cpirate.exam's logs are different. As a result, pre-build cbuccarneer.exam is successful and intel-FFT is failed. So intel-FFT library may act differently in this case. For reference, the logs are attached. --- the cpirate.exam logs by pre-built vs intel-FFT Automatic content fitting: Skew by: -0.21875,0 (dense, ordered) 0.96875,0.875 (dense, ordered) Unbiased results from initial cycle: R-factor : 0.790483 0.195488 Free R-factor: 0.845515 1.15188 E-correl : 0.504196 0.991128 Free E-correl: 0.195072 0.2489 LgLkGain : 0.331314 2.8692 Free LgLkGain: 0.30185 -inf Biased results from cycle 2: Biased R-factor : 0.676287 0.140585 Biased Free R-factor: 0 0 Biased E-correl : 0.650768 0.988193 Biased Free E-correl: 0 0 Biased LgLkGain : 0.526848 nan Biased Free LgLkGain: 0 0 Biased results from cycle 3: Biased R-factor : 0.60964 0.191351 Biased Free R-factor: 0 0 Biased E-correl : 0.726925 0.977604 Biased Free E-correl: 0 0 Biased LgLkGain : 0.694419 nan Biased Free LgLkGain: 0 0 Thanks, Nobuo OKAZAKI Kevin Cowtan wrote: > OK, I had a closer look at this. > > Buccaneer is failing because it can't grow a single residue of chain > from the seed positions. This can only happen if the map is total garbage. > > So the first thing to do is check the phases which are going into > buccaneer in both the gcc and intel cases. Calculate a map from each > set, and make sure they are both reasonably similar and interpretable > (they should be for the example data). > > If the two maps, differ, then the problem is in the upstream program. > > If they don't, then the most likely cause is that buccaneer is not > calculating the map correctly. Add 'mapout buc.map' to the buccaneer > command file, and rerun both the gcc and intel versions. If the > buccaneer map from the intel version is corrupted, then the problem is > most likely the linking of the fft library in the intel case.
