Hi,
I am looking for an affordable "3D Protein Cave" configuration (thus, no
quadro >1500 US$ and no 3D stereoscopic projector > 1500 US$).
At Schrödinger (Pymol) they successfully operate a viewsonic pro8450w, a
high-end quadro and the vnidia 3D vision ready glasses (USB port based
IR emitt
Dear CCP4 users
Has anybody successfully configured NVIDIA 3D VISION-2 kit in CentOS-5.x and
used COOT hardware stereo.
I am currently having Quadro 4000 graphics card and a 3D compatible Alienware
monitor. I could configure these easily in windows but not getting much clues
for CentOS-5.x.
Hi,
on a Mandriva system, we had it working adding those two lines in the
xorg.conf file, in the Section "Screen" :
Option "Stereo" "10"
Option "Stereo" "AllowDFPStereo" "1"
The first line is mandatory with a LCD monitor.
I have no idea what the second line means.. but it works with coot.
ho
Hello Dear all
I am trying running dm (density modification)
programe for density modification, but it giving error complaining about
density map. It says, dm: (WFO) No density in map! Check input FOM
present and nonzero.
Please suggest me how to overcome this proble
Well, if you use the same coefficientsin fft, do you get a map out?
Artem
On Jun 14, 2012 6:58 AM, "Appu kumar" wrote:
> Hello Dear all
> I am trying running dm (density modification)
> programe for density modification, but it giving error complaining about
> density
Do you not need the 3 pin mini din to 2.5mm vesa cable with the 3d
vision v2 emitter under linux? I haven't found a model # for this kit
that comes with this cable and last I checked nvidia store was out of
stock on purchasing these cables separately, so we still purchase the
v1 kits.
On Thu, Jun
> 1) a quadro 600 or 2000 and a DLP 3D Ready projector (3000-4000 Lumen)
> with DLP Link Glasses?
Here's the xorg.conf for (1) since I already gave you the hardware
setup : http://nopaste.info/946bd53e3e.html . Enable generic active
stereo in windows. You can basically drive this with any quadr
If you run mtzdmp on your mtz file what labels do you get for FOM ? Enter the
right label into DM and it won't complain.
Jürgen
Sent from my iPad
On Jun 14, 2012, at 7:58, "Appu kumar" wrote:
> Hello Dear all
> I am trying running dm (density modification)
> prog
Lecturer/Senior lecturer position in X-ray crystallography located at the
Beatson Institute for Cancer Research.
The Beatson Institute for Cancer Research is committed to carry out world-class
research into the biology of cancer and to help develop better treatments to
improve the quality of lif
In our case, the emitter is indeed connected to the graphic card with
the 3 pin mini cable. The cable was included in the box.
Le 14/06/2012 14:32, Sabuj Pattanayek a écrit :
Do you not need the 3 pin mini din to 2.5mm vesa cable with the 3d
vision v2 emitter under linux? I haven't found a mode
Hi,
I'm wondering, whether it's possible to run AIMLESS on Windows. Is there a
binary version or instruction on how to compile if for windows? Would it
work under windows anyhow?
From time to time, I do crystallographic work under Windows (even more
since phenix is ported).
Regards,
Jan
Dear Michael,
In sftools you can generate a set of FreeR flags on only a subset of
the reflections. If you have a combined dataset (high and low relsoution), then
select the high res refls, construct the FreeR set (unselected refls should not
be changed) and write out.
sftools
READ MTZFI
is demonstrated if you jump to 1:20 on the timeline and wait for about 8
seconds.
http://www.youtube.com/watch?v=spTmZrj9tv4
They didn't like the clear freeze of the crystal as it was invisible to their
camera.
But otherwise the video is considered advertisement for what we do.
And it won an awar
Dear Jan,
There will be a Windows version of Aimless in the upcoming 6.3.0 release of
CCP4 which is due very soon. We'll announce it on the bb when it's ready.
Best wishes,
Ronan
-Original Message-
From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Jan
Gebauer
Se
This is a bug that arises when you import data with scalepack2mtz.
The resulting mtz file is not "sorted", and apparently this makes DM
unhappy in a rather uninformative way. However, if you run the data
through CAD before inputting it into DM, then it works just fine. That
is, just use the
thanks a lott sir
It really helped me, Thank you for your kind and valuable information.
Thank you Appu
On 14 June 2012 20:53, James Holton wrote:
>
> This is a bug that arises when you import data with scalepack2mtz.
>
> The resulting mtz file is not "sorted", and apparently this makes DM
> unh
Proposition: what the paper below describes (map variance) would be
rather useful to access routinely (e.g. in coot etc), given that it
describes how to calculate by FFT.
Discuss. (No, I've not read any of it carefully.)
/Acta Cryst./ (2012). A*68*, 464-469 [ doi:10.1107/S010876731201577
Hi everyone,
I think my first post did not clearly describe the machine I need. It's
very kind of Zhijie and other repliers to reminde me this problem. So I
post it again here, try to make it short and clear. Sorry for occupying the
space of your mailbox twice.
" Actually I need a chamber like a c
Hello All,
I would like to discuss symmetry axes, but I'm not sure what the notation
convention is. For example, I'd like to say something about a 2(1) along the
x-axis, but the phrase "the 2(1) symmetry axis along x" is a bit cumbersome to
repeat many times or to put in a table. So I'd like a
On Thursday, June 14, 2012 12:06:13 pm James Stroud wrote:
> Hello All,
>
> I would like to discuss symmetry axes, but I'm not sure what the notation
> convention is. For example, I'd like to say something about a 2(1) along the
> x-axis, but the phrase "the 2(1) symmetry axis along x" is a bit
Hi,
Isn't there a notation 2 subscript 1 superscript x (one on top of the other)
for "2-fold screw along x" for example? and likewise for y and z?
Boaz
Boaz Shaanan, Ph.D.
Dept. of Life Sciences
Ben-Gurion University of the Negev
Beer-Sheva 84105
Israel
E-mail: bshaa...@bgu.ac.il
Phon
Hi,
I am using old RedHat now and am having some problem for using new
version of coot.
When I downloaded
coot-0.6.2-binary-Linux-i386-rhel-5-python-gtk2.tar.gz, and simply
untared and went to bin directory. When I typed as following it gave
me following message:
$ ./coot
COOT_PREFIX is /home2/yjch
UNIVERSITÄT BASEL - PAUL SCHERRER INSTITUTE
Professor in Nano-Diffraction
of Biological Specimens
The University of Basel and the Paul Scherrer Institute (PSI) in Switzerland
invite applications for a Professorship in the area of Nano-Diffraction of
Biological Specimens. We are considering app
The 2012 Structural Molecular Biology (SMB) Summer School will be held at SSRL
between July 16th-20th and will focus on the following disciplines:
Macromolecular Crystallography, Small Angle X-Ray Scattering, X-ray Absorption
Spectroscopy, X-ray Fluorescence Imaging and X-ray Emission Spectrosco
If RedHat allows you to install a more current version of glibc, then do that.
If not, switch to something like Ubuntu.
William G. Scott
Professor
Department of Chemistry and Biochemistry
and The Center for the Molecular Biology of RNA
228 Sinsheimer Laboratories
University of California at Sant
Yes, I had several cases like that - at least two published (PTPbeta
and the TurboGFP structures). In the first case the protein needed a
touch of beta-OG to stay soluble after the MBP tag was cut off (you
have to wonder how many folks tried cutting off MBP, noticed that the
product crashes and dec
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