Re: [ccp4bb] Histogram/Plot of Buried Surface Areas

2011-05-31 Thread Jacob Keller
Dear Crystallogrpahers, thanks for all of the responses to this perennial crystallographic question (is my crystallogrpahic assembly biologically-relevent). Summarized, they were: Joel Janin's work, particularly: --Acta Cryst 2007, --The atomic structure of protein-protein recognition sites. Lo

Re: [ccp4bb] Histogram/Plot of Buried Surface Areas

2011-05-26 Thread Kushol Gupta
Hi Jacob - These references might(?) be helpful: Proteins. 1995 Dec;23(4):580-7. Protein-protein interaction at crystal contacts. Janin J, Rodier F. J Mol Biol. 2004 Feb 27;336(4):943-55. A dissection of specific and non-specific protein-protein interfaces. Bahadur RP, Chakrabarti P, Rodier F, J

Re: [ccp4bb] Histogram/Plot of Buried Surface Areas

2011-05-26 Thread Eugene Krissinel
Dear Jacob, I do not have exactly what you are asking about but some clues. I am not fond of using buried surface area as an indicator of anything in particular and always use energy estimates, however unreliable they may be. In J.Comp.Chem. 31(1),133-143, I put a probability plot for PISA to g