using
http://www.ebi.ac.uk/msd-srv/msdsite/
and then under "Ligand environment:"
click Edit and draw the interaction
The oval shape is a ligand - click on it
and say make it GAL
you can say add a TRP connected to a ligand
(it is a rectangle shape)
and click on the "bond" circle and
Try submitting your coordinates to www.ebi.ac.uk/ msd and choose the
task MSDpisa
It gives you lots of info including that..
Eleanor
Sreeram Mahesh wrote:
Hi All!
I have found stacking interaction between aromatic residues of a
structure of an enzyme. does anybody knows any server which
Hi Sreeram,
Ironically IISc Bangalore, your host institute has the server that
exactly does what you want and more!
The paper has just been published in the Nucleic Acid Research.
Tina KG, Bhadra R, Srinivasan N.
PIC: Protein Interactions Calculator.
Nucleic Acids Res. 2007 Jul 1;35(Web Serv
Hi All!
I have found stacking interaction between aromatic residues of a
structure of an enzyme. does anybody knows any server which can quantify
the stacking interaction between side chains of aminoacids.
Thanking very much in advance!
Sreeram Mahesh
Research Student
Prof S Ramakumar's
