Dear all,
Thanks a lot for all the replies and suggestions. I'm currently busy trying out
a few of the options, and I'll try to post a brief summary after I've finished
the analysis.
Cheers,
Ronnie
On Jan 15, 2010, at 09:12, kuett...@bbz.uni-leipzig.de wrote:
> Dear Ronnie,
>
> have you trie
This server and/or standalone program may be useful as well because of
speed, being that 20 structures will take a while on most servers:
http://ub.cbm.uam.es/mammoth/mult/
At 05:17 AM 1/12/2010, Ronnie Berntsson wrote:
Dear all,
A bit off the topic question perhaps.
I am trying to find a pr
Hi Ronnie,
the (a) Mammoth tool might also work (but I just tried 6 structures or so when
I used it a couple years ago - not 20).
Jan
--- Ronnie Berntsson schrieb am Di, 12.1.2010:
Von: Ronnie Berntsson
Betreff: [ccp4bb] off topic: multiple structural sequence alignment
An: CCP4BB
Both MUSTANG and MATT are good choices:
http://www.cs.mu.oz.au/~arun/mustang/
http://groups.csail.mit.edu/cb/matt/
On Jan 12, 2010, at 7:17 AM, Ronnie Berntsson wrote:
> Dear all,
>
> A bit off the topic question perhaps.
> I am trying to find a program which can do multiple structural seque
I ended up using multiprot and staccato recently
http://bioinfo3d.cs.tau.ac.il/MultiProt/
There is a server for multiprot, but I downloaded the applications. I
still ended up doing quite a bit manual editing in filling the gaps in
the structures etc.
I stumbled also over a link about the ma
Dear all,
A bit off the topic question perhaps.
I am trying to find a program which can do multiple structural sequence
alignments. What I would like is a program which can take as input PDB codes
(or files), and which will output a multiple sequence alignment in FASTA format
with the full seq
