This server and/or standalone program may be useful as well because of
speed, being that 20 structures will take a while on most servers:
http://ub.cbm.uam.es/mammoth/mult/
At 05:17 AM 1/12/2010, Ronnie Berntsson wrote:
Dear all,
A bit off the topic question perhaps.
I am trying to find a program which can do multiple structural sequence
alignments. What I would like is a program which can take as input PDB
codes (or files), and which will output a multiple sequence alignment in
FASTA format with the full sequences of the supplied proteins intact.
Preferably said server/program should be able to handle at least 20 input
pdbs at once.
I've been looking around, but have so far failed to find a program which
does this. If anyone knows of a program or server which could handle this,
I would be very grateful.
Cheers,
Ronnie Berntsson
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