Dear all, Thanks a lot for all the replies and suggestions. I'm currently busy trying out a few of the options, and I'll try to post a brief summary after I've finished the analysis.
Cheers, Ronnie On Jan 15, 2010, at 09:12, kuett...@bbz.uni-leipzig.de wrote: > Dear Ronnie, > > have you tried the java program 'indonesia' which also contains a > 3D-alignment/sequence comparison tool: > > http://xray.bmc.uu.se/dennis/ > > Best regards, > Bart > > Ronnie Berntsson wrote: >> Dear all, >> A bit off the topic question perhaps. I am trying to find a program which >> can do multiple structural sequence alignments. What I would like is a >> program which can take as input PDB codes (or files), and which will output >> a multiple sequence alignment in FASTA format with the full sequences of the >> supplied proteins intact. Preferably said server/program should be able to >> handle at least 20 input pdbs at once. I've been looking around, but have so >> far failed to find a program which does this. If anyone knows of a program >> or server which could handle this, I would be very grateful. >> Cheers, >> Ronnie Berntsson
