Re: [ccp4bb] announcement: (another) GUI for XDS

2013-06-26 Thread Miguel Ortiz Lombardia
Yep, sorry that is the link I actually made, I wrote it too hastily, my bad. Miguel Ortiz Lombardía Architecture et Fonction des Macromolécules Biologiques (UMR7257) CNRS, Aix-Marseille Université Case 932, 163 Avenue de Luminy, 13288 Marseille cedex 9, France Tel: +33(0) 491 82 55 93 Fax: +33(0)

Re: [ccp4bb] announcement: (another) GUI for XDS

2013-06-26 Thread Miguel Ortiz Lombardía
Hmm, My XDS-Viewer.app installation is not in a standard place, more likely you need: cd /usr/local/bin ln -s /Applications/XDS-Viewer.app/Contents/MacOS/xds-viewer-bin . Cheers, Miguel Ortiz Lombardía Architecture et Fonction des Macromolécules Biologiques (UMR7257) CNRS, Aix-Marseille Univer

Re: [ccp4bb] announcement: (another) GUI for XDS

2013-06-26 Thread Miguel Ortiz Lombardía
Hi Sebastiano, Yes, you have to put the xds-viewer executable in your PATH. In the Mac and assuming /usr/local/bin is in your PATH: cd /usr/local/bin ln -s /Applications/Sci/Struct/XDS-Viewer.app/Contents/MacOS/xds-viewer-bin . Cheers, Miguel Ortiz Lombardía Architecture et Fonction des Macrom

Re: [ccp4bb] announcement: (another) GUI for XDS

2013-06-26 Thread Kay Diederichs
Hi Sebastiano, sorry, I don't see immediately what's wrong. The console seems to show the XDS output of an INTEGRATE job that only looked at a single (judging from the small number of reflections ...) frame (number 10, I'd guess; you could check this if you scroll up a bit). Could you please ch

Re: [ccp4bb] announcement: (another) GUI for XDS

2013-06-26 Thread Sebastiano Pasqualato
Hi Kay, hi all, sorry to bother again, but I was wondering if people is experiencing the same problem I am. With the nice new XDS graphical interface, I cannot manage to have the "show frame with predicted spots" script to work. It looks like all the steps are performed correctly, but then XD

Re: [ccp4bb] announcement: (another) GUI for XDS

2013-06-20 Thread Sebastiano Pasqualato
hi Kay, thanks a lot for the prompt reply. Indeed the problem rises from the fact that the program is launched in a "non-bash" environment, so one would have to add generate_XDS.INP to the PATH of the Mac interface, rather than to the bash PATH. I took the workaround of launching XDSgui from th

Re: [ccp4bb] announcement: (another) GUI for XDS

2013-06-20 Thread Sebastiano Pasqualato
Hi Kay, hi all, sorry for the -maybe- naive questions, but i'm struggling to get the GUI for XDS going. I'm on Mac OSX 10.8.4. The dmg installer and the script work nicely. However, I have a couple of problems:: 1. I have placed the generate_XDS.INP script in the XDS directory (/Applications/

[ccp4bb] announcement: (another) GUI for XDS

2013-06-15 Thread Kay Diederichs
Hi everybody, I developed a GUI for academic users of XDS which is documented at http://strucbio.biologie.uni-konstanz.de/xdswiki/index.php/XDSgui . This XDSwiki article also has the links to binaries of xdsGUI (or XDSgui or xds-gui; this has not been decided yet ...), for Linux 32 and 64 bit (