Yep, sorry that is the link I actually made, I wrote it too hastily, my bad.
Miguel Ortiz Lombardía Architecture et Fonction des Macromolécules Biologiques (UMR7257) CNRS, Aix-Marseille Université Case 932, 163 Avenue de Luminy, 13288 Marseille cedex 9, France Tel: +33(0) 491 82 55 93 Fax: +33(0) 491 26 67 20 mailto:miguel.ortiz-lombar...@afmb.univ-mrs.fr http://www.afmb.univ-mrs.fr/Miguel-Ortiz-Lombardia El 26/06/13 19:46, Kay Diederichs escribió: > Hi Sebastiano, > > ok, I think I have the solution, and, hoping it's correct, have put it into > http://strucbio.biologie.uni-konstanz.de/xdswiki/index.php/XDSgui#Installation > > > What you need is the symlink > ln -s /Applications/XDS-Viewer.app/Contents/MacOS/xds-viewer-bin > /usr/local/bin/xds-viewer > > In the above please note the "xds-viewer-bin" - I guess you have it > differently. > > HTH, > > Kay > > > Am 26.06.13 19:23, schrieb Sebastiano Pasqualato: >> >> Hi Kay, >> xds nicely outputs the FRAME_##.cbf image in the temp directory. >> The problem is that the command >> >> xds-viewer FRAME_10.cbf >> >> does not open the frame, but only the viewer, without loading the frame. >> If I then open the frame from the FIle --> Load image menu commands, I >> have it. >> Of course that's ok, but a little more tedious. >> >> Miguel, the xds-viewer command is nicely added to the path, I guess, by >> exporting the directory in the .bashrc >> >> export XDSVIEWERPATH=/Applications/XDS-Viewer.app/Contents/MacOS/ >> >> I have tried setting the link as you suggested, but that does not make >> the command above open the image directly. >> >> Still puzzled, >> Sebastiano >> >> On Jun 26, 2013, at 5:04 PM, Kay Diederichs >> <kay.diederi...@uni-konstanz.de <mailto:kay.diederi...@uni-konstanz.de>> >> wrote: >> >>> Hi Sebastiano, >>> >>> sorry, I don't see immediately what's wrong. The console seems to show >>> the XDS output of an INTEGRATE job that only looked at a single >>> (judging from the small number of reflections ...) frame (number 10, >>> I'd guess; you could check this if you scroll up a bit). Could you >>> please check the contents of the "temp" directory? It should have a >>> file FRAME_10.cbf . If you use the console window, "cd" to that >>> directory and run >>> xds-viewer FRAME_10.cbf >>> then you should be able to see what you want to see. If that works, >>> then I do not understand why the script fails. If the file is _not_ >>> there or "xds-viewer FRAME_10.cbf" does _not_ show it, then we'll have >>> to sort this out. I suggest to move the debugging to private email, >>> though, and to only post the solution. But maybe someone else has the >>> solution already? >>> By the way, a newer version of xdsGUI is available for download, and >>> there's also versions that run on older Linux systems. >>> >>> best, >>> >>> Kay >>> >>> >>> >>> >> >> -- >> *Sebastiano Pasqualato, PhD* >> Crystallography Unit >> Department of Experimental Oncology >> European Institute of Oncology >> IFOM-IEO Campus >> via Adamello, 16 >> 20139 - Milano >> Italy >> >> tel +39 02 9437 5167 >> fax +39 02 9437 5990 >> >> >> >> >> >> >
