Hi Reza,
you could also use Endscript, it is designed for this purpose.
http://endscript.ibcp.fr/ESPript/ENDscript/
Best
Vincent
Le 17/03/2019 à 01:52, Reza Khayat a écrit :
Hi,
Thanks. Several suggestions have been made:
1. UCSF Chimera can plot %ID and %Similarity
2. Consurf can plot conser
Hello Reza,
Have you tried ConSurf?
http://consurf.tau.ac.il/2016/
I just noticed they now also have precalculated results for proteins deposited
in the PDB:
http://bental.tau.ac.il/new_ConSurfDB/
Hope this helps,
Guillaume
> On Mar 16, 2019, at 17:42, Reza Khayat wrote:
>
> Hi,
>
>
>
Hi,
Thanks. Several suggestions have been made:
1. UCSF Chimera can plot %ID and %Similarity
2. Consurf can plot conservation scores
3. AL2CO can also plot conservation scores
I have a protein with a fast molecular clock, so I need to think about this a
bit more.
Best wishes,
Reza
Reza Khayat
?Hi,
Can someone direct me to a program that can replace the B-factors of a PDB with
sequence variability calculated from a sequence alignment? I'm have tried the
PVS server, but my sequence alignment is too large for its liking. Thanks.
Best wishes,
Reza
Reza Khayat, PhD
Assistant Professo
