Dear Paul,
Thank you
Regards
Devbrat
On Thu, Jun 6, 2024, 8:53 AM Paul Emsley wrote:
>
> On 06/06/2024 04:00, Devbrat Kumar wrote:
>
>
> --
> Dear Paul,
>
> Thank you for your response. I wanted to compare a Coulomb potential map
> to an electron density map. Before aligning these maps, I need
On 06/06/2024 04:00, Devbrat Kumar wrote:
--
Dear Paul,
Thank you for your response. I wanted to compare a Coulomb potential
map to an electron density map. Before aligning these maps, I need to
bring them to similar parameters, which requires rescaling one map to
match the other. After t
Dear Paul,
Thank you for your response. I wanted to compare a Coulomb potential map to
an electron density map. Before aligning these maps, I need to bring them
to similar parameters, which requires rescaling one map to match the other.
After that, I can proceed with density subtraction.
I hope t
pace (this is trivial to do interactively in ChimeraX) rather than by
> MR.
> --
> *From:* CCP4 bulletin board on behalf of Eleanor
> Dodson <176a9d5ebad7-dmarc-requ...@jiscmail.ac.uk>
> *Sent:* Wednesday, June 5, 2024 1:39:56 PM
> *To:* CCP4BB@
t; *Subject:* Re: [ccp4bb] Resampling CryoEM Density map to XRD Density map
> for Difference Map
>
> Hmm - rather tricky! I would do an MR search with the crystal model v the
> EM density,
> Steps would be:
> 1) convert EM density to "structure factors". - there are tools wh
Hello Eleanor,
Thank you for your consistent response to my inquiry. I will follow your
suggestions and willl tell you the updates.
Regards
Devbrat
On Wed, Jun 5, 2024, 5:10 PM Eleanor Dodson <
176a9d5ebad7-dmarc-requ...@jiscmail.ac.uk> wrote:
> Hmm - rather tricky! I would do an MR search
Hello Martin,
Thank you for your email and I will look into it.
Regards
Devbrat
On Wed, Jun 5, 2024, 4:16 PM Martin Malý wrote:
> Dear Devbrat,
>
> I am now playing with a similar problem but I don't have a simple solution
> for you as I'm also quite stuck. You can check these software tools
On 05/06/2024 07:00, Devbrat Kumar wrote:
--
Hello Everyone,
Hello Devbrat,
I have a query regarding the resampling of cryoEM density to match
crystal density to obtain a density difference map. Specifically, I am
trying to determine if it is feasible to resample a cryoEM map with an
X
equ...@jiscmail.ac.uk>
> Sent: Wednesday, June 5, 2024 1:39:56 PM
> To: CCP4BB@JISCMAIL.AC.UK
> Subject: Re: [ccp4bb] Resampling CryoEM Density map to XRD Density map for
> Difference Map
>
> Hmm - rather tricky! I would do an MR search with the crystal model v the EM
>
uk>
Sent: Wednesday, June 5, 2024 1:39:56 PM
To: CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] Resampling CryoEM Density map to XRD Density map for
Difference Map
Hmm - rather tricky! I would do an MR search with the crystal model v the EM
density,
Steps would be:
1) convert EM density to "s
Hmm - rather tricky! I would do an MR search with the crystal model v the
EM density,
Steps would be:
1) convert EM density to "structure factors". - there are tools which do
this ..
1a) You need to go back to ccp4i - program sfall to read map to generate
SFs from map - then cad or sftools to add
Dear Devbrat,
I am now playing with a similar problem but I don't have a simple
solution for you as I'm also quite stuck. You can check these software
tools which involve some scripting in Python (NumPy, SciPy) and C++:
EMDA (for cryoEM maps, included in CCP-EM)
https://gitlab.com/ccpem/emda
Hello Everyone,
Greetings!
I have a query regarding the resampling of cryoEM density to match crystal
density to obtain a density difference map. Specifically, I am trying to
determine if it is feasible to resample a cryoEM map with an XRD density
map. However, each time I attempt this, the resam
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