Re: [ccp4bb] Co-Crystallization with drug molecule

2024-10-04 Thread Gerard Bricogne
Dear Fritz, You are right. The recollection of that striking 2015 paper was somehow too strong to be 100% faithful: these are two different modes of using the ligand deposited on a solid support by drying a solution of it, to avoid the DMSO problem. Best wishes, Gerard. -- On

Re: [ccp4bb] Co-Crystallization with drug molecule

2024-10-04 Thread Guenter Fritz
:) Gerard, "soaking"! Thanks for the reference! cheers guenter Dear Guenter, The first description of the idea behind this technique that I am aware of is that published almost 10 years ago by a French group under the name of "'dry' co-crystallisation" in the following paper:

Re: [ccp4bb] Co-Crystallization with drug molecule

2024-10-04 Thread Gerard Bricogne
Dear Guenter, The first description of the idea behind this technique that I am aware of is that published almost 10 years ago by a French group under the name of "'dry' co-crystallisation" in the following paper: http://dx.doi.org/10.1107/S1399004715010342 Best wishe

Re: [ccp4bb] Co-Crystallization with drug molecule

2024-10-04 Thread Guenter Fritz
Hi Amit, like Artem wrote below, even despite poor solubility, soaks with dried compounds work well (also in our hands). We adapted it from the work of T. Barthel, J. Wollenhaupt and Manfred Weiss. Also colleagues from industry report good results. We add compound dissolved in DMSO to the crysta

Re: [ccp4bb] Co-Crystallization with drug molecule

2024-10-04 Thread Jeroen Mesters
Wednesday, October 2, 2024 at 2:51 PM To: CCP4BB@JISCMAIL.AC.UK<mailto:CCP4BB@JISCMAIL.AC.UK> mailto:CCP4BB@JISCMAIL.AC.UK>> Subject: [ccp4bb] Co-Crystallization with drug molecule Hi everyone, I am trying to crystallize a protein with a drug molecule. The protein concentration

Re: [ccp4bb] Co-Crystallization with drug molecule

2024-10-04 Thread Dom Bellini
*Subject: *[ccp4bb] Co-Crystallization with drug molecule Hi everyone, I am trying to crystallize a protein with a drug molecule. The protein concentration is 15.5 mg/ml, the drug stock concentration is 10 mM, and the drug is dissolved in DMSO. I am adding the drug to a final concentration of

Re: [ccp4bb] Co-Crystallization with drug molecule

2024-10-03 Thread Eta A Isiorho
ubject: [ccp4bb] Co-Crystallization with drug molecule Hi everyone, I am trying to crystallize a protein with a drug molecule. The protein concentration is 15.5 mg/ml, the drug stock concentration is 10 mM, and the drug is dissolved in DMSO. I am adding the drug to a final concentration of 1 mM in

[ccp4bb] AW: [ccp4bb] Co-Crystallization with drug molecule

2024-10-03 Thread 0000ea6531a88430-dmarc-request
, delete the e-mail and do not disclose its contents to any person. Any unauthorized review, use, disclosure, copying or distribution is strictly prohibited. Von: CCP4 bulletin board Im Auftrag von Tom Peat Gesendet: Mittwoch, 2. Oktober 2024 23:23 An: CCP4BB@JISCMAIL.AC.UK Betreff: Re: [ccp4bb] Co-

Re: [ccp4bb] Co-Crystallization with drug molecule

2024-10-02 Thread Tom Peat
K Subject: Re: [ccp4bb] Co-Crystallization with drug molecule Dear Amit As David already pointed out, all proteins are different and it's hard to say in advance what amount of DMSO may work (or not). An additional concern is that DMSO can also interfere with ligand binding (cases from m

Re: [ccp4bb] Co-Crystallization with drug molecule

2024-10-02 Thread Artem Evdokimov
Dear Amit As David already pointed out, all proteins are different and it's hard to say in advance what amount of DMSO may work (or not). An additional concern is that DMSO can also interfere with ligand binding (cases from my personal past history), especially if these inhibitors/ligands are on

Re: [ccp4bb] Co-Crystallization with drug molecule

2024-10-02 Thread David J. Schuller
on behalf of amit gaur Sent: Wednesday, October 2, 2024 2:51 PM To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] Co-Crystallization with drug molecule Hi everyone, I am trying to crystallize a protein with a drug molecule. The protein concentration is 15.5 mg/ml, the drug stock concentration is

[ccp4bb] Co-Crystallization with drug molecule

2024-10-02 Thread amit gaur
Hi everyone, I am trying to crystallize a protein with a drug molecule. The protein concentration is 15.5 mg/ml, the drug stock concentration is 10 mM, and the drug is dissolved in DMSO. I am adding the drug to a final concentration of 1 mM in 100 ul of protein, and the DMSO volume is 10 ul for Co