Dear Tim,
Thanks, The Jalview, output to textbox in PIR worked thr trick.
S.Jayashankar
Research Student
Institute for Biophysical Chemistry
Hannover Medical School
Germany.
On Tue, Mar 27, 2012 at 3:52 PM, Tim Gruene wrote:
> -BEGIN PGP SIGNED MESSAGE-
> Hash: SHA1
>
> Dear Jayashank
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
Dear Jayashankar,
sorry, you did explain this in your model and I flipped clustalo with
clustalw. Even though when I used the option '-convert', clustalw does
not re-align the input but simply converts it, so in case it can read
the clustalo output, t
Dear Tim,
I try to model a full length protein based on various domains solved
already.
In that case, alignment of multiple sequence should approximately locate to
the corresponding domain region.
Clustalw results in an unexpected alignment file.
Whereas the output from clustal omega is perfect a
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
Dear S. Jayashankar,
have you tried the clustalw options '-convert -output=PIR'? This should
result in a pir-formatted output file.
Tim
On 03/27/12 10:18, Jayashankar wrote:
> Dear All,
>
> A bit offtopic question,
>
> Does any body know how can I
Dear All,
A bit offtopic question,
Does any body know how can I get the PIR output of the aligned sequence
from clustal omega.
I have a full length protein solved, to give weightage during comparitive
modelling, I use domains of the same/similar protein solved before.
I expect an alignment someth
