-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Dear S. Jayashankar,
have you tried the clustalw options '-convert -output=PIR'? This should result in a pir-formatted output file. Tim On 03/27/12 10:18, Jayashankar wrote: > Dear All, > > A bit offtopic question, > > Does any body know how can I get the PIR output of the aligned sequence > from clustal omega. > I have a full length protein solved, to give weightage during comparitive > modelling, I use domains of the same/similar protein solved before. > I expect an alignment something that looks like one below, and clustalw > does'nt seems to work , but clustal omega does it. But there is no .pir > format output. > > > 1.cccccccccccccaaaaaaaaaabbbbbbbb > 2.-------------------------------------bbbbbbbb > 3.ccccccccccccc------------------------------ > 4.------------------aaaaaaaaaaa-------------- > > > Thanks > S.Jayashankar > Research Student > Institute for Biophysical Chemistry > Hannover Medical School > Germany. > - -- - -- Dr Tim Gruene Institut fuer anorganische Chemie Tammannstr. 4 D-37077 Goettingen GPG Key ID = A46BEE1A -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.12 (GNU/Linux) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/ iD8DBQFPccAdUxlJ7aRr7hoRAh2BAJwP6HdQd6t0/TVZBLZCA/S4KEMY9wCeM2WL 7R/ULzOB+kq8fltCbQ6EUR4= =fzmD -----END PGP SIGNATURE-----
