Sorry for asking a non-ccp4 question. Is there any way to mine the PDB to
accumulate the structures which have similar binding site(ligand binding
pocket) with that of a particular structure. If anyone can suggest a program
to do this would be great. I want to do this computationally.
You c
, 10 July, 2009 9:35:44 AM
Subject: Re: [ccp4bb] Active site similarity search
PDBeSite was designed for this, see
http://www.ebi.ac.uk/pdbe-site/PDBeSite/
Eugene
On Fri, 10 Jul 2009, Raja Dey wrote:
Hi,
Sorry for asking a non-ccp4 question. Is there any way to mine the PDB to
accumulate
Thanks to Eugene. I got an idea how to search PDB against a query structure
locally.
Raja
From: Eugene Krissinel
To: Raja Dey
Cc: CCP4BB@jiscmail.ac.uk
Sent: Friday, 10 July, 2009 9:35:44 AM
Subject: Re: [ccp4bb] Active site similarity search
PDBeSite was
Sorry, I forgot to mention that the quarry structure has not yet deposited to
PDB.
Raja
From: Eugene Krissinel
To: Raja Dey
Cc: CCP4BB@jiscmail.ac.uk
Sent: Friday, 10 July, 2009 9:35:44 AM
Subject: Re: [ccp4bb] Active site similarity search
PDBeSite was
PDBeSite was designed for this, see
http://www.ebi.ac.uk/pdbe-site/PDBeSite/
Eugene
On Fri, 10 Jul 2009, Raja Dey wrote:
Hi,
Sorry for asking a non-ccp4 question. Is there any way to mine the PDB to
accumulate the structures which have similar binding site(ligand binding
pocket) with t
Hi,
Sorry for asking a non-ccp4 question. Is there any way to mine the PDB to
accumulate the structures which have similar binding site(ligand binding
pocket) with that of a particular structure. If anyone can suggest a program to
do this would be great. I want to do this computationally.
Th
