yes, you can upload a custom file there.
Eugene.
On Fri, 10 Jul 2009, Raja Dey wrote:
Thanks to Eugene. I got an idea how to search PDB against a query structure
locally.
Raja
________________________________
From: Eugene Krissinel <k...@ebi.ac.uk>
To: Raja Dey <deyra...@yahoo.co.in>
Cc: CCP4BB@jiscmail.ac.uk
Sent: Friday, 10 July, 2009 9:35:44 AM
Subject: Re: [ccp4bb] Active site similarity search
PDBeSite was designed for this, see
http://www.ebi.ac.uk/pdbe-site/PDBeSite/
Eugene
On Fri, 10 Jul 2009, Raja Dey wrote:
Hi,
Sorry for asking a non-ccp4 question. Is there any way to mine the PDB to
accumulate the structures which have similar binding site(ligand binding
pocket) with that of a particular structure. If anyone can suggest a program to
do this would be great. I want to do this computationally.
Thanking you in advance...
Raja
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