Sorry, I forgot to mention that the quarry structure has not yet deposited to PDB.
Raja ________________________________ From: Eugene Krissinel <k...@ebi.ac.uk> To: Raja Dey <deyra...@yahoo.co.in> Cc: CCP4BB@jiscmail.ac.uk Sent: Friday, 10 July, 2009 9:35:44 AM Subject: Re: [ccp4bb] Active site similarity search PDBeSite was designed for this, see http://www.ebi.ac.uk/pdbe-site/PDBeSite/ Eugene On Fri, 10 Jul 2009, Raja Dey wrote: > Hi, Sorry for asking a non-ccp4 question. Is there any way to mine the PDB to accumulate the structures which have similar binding site(ligand binding pocket) with that of a particular structure. If anyone can suggest a program to do this would be great. I want to do this computationally. Thanking you in advance... Raja Love Cricket? Check out live scores, photos, video highlights and more. Click here http://cricket.yahoo.com Looking for local information? Find it on Yahoo! Local http://in.local.yahoo.com/
