Dear all,
It's been a while since last time I deposited structures to PDB. Do I really
need an ORCID (Open Researcher and Contributor IDentifier) now to submit files?
Is it mandatory?
Thank you!
Jie
To unsubscribe from t
Thank you.
Jie
From: Roger Rowlett
Sent: Tuesday, May 2, 2017 1:36:48 PM
To: Jie Liu; CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] Dynamic light scattering instrument
We've had a Malvern Zetasizer for many years.
___
Ro
Dear all,
We are interested in using dynamic light scattering to evaluate
crystallizability of proteins. What instrument would you recommend?
Many thanks and with best regards.
Jie
Dear you all
I am a novice in docking a structure to an EM map. The map was downloaded
from the EM database with all the header infomation. I used some software to
dock my structure. However the structure looks a little bit bigger than the
map region where it is doceked in. My question is: is
Dear you all
May I ask a question? I tried to dock my protein structure onto an cryo-EM
density map. I loaded both the map file and my model coordinates into
Chimera. But it looks apparently that they are not in the same size scale.
My model is much bigger than the size of the EM map region wh
Hi
I also encountered the same problem after recent updates (not the most
recent one, but a couple of updates back). Choosing to run old-truncate will
get it around.
Best wishes
Jie
- Original Message -
From: ""
To:
Sent: Thursday, June 19, 2014 1:11 PM
Subject: [ccp4bb] ctrunca
...@njms.rutgers.edu.
Jie Liu
Dear Airlie and Randy
Thank you! I have seen this error for quite some time and get it around by
using ccp4-6.3 for Phaser. Will try to be the first to report next time :-)
All the best
Jie
- Original Message -
From: "Airlie McCoy"
To: "jie liu"
Cc:
Sent: T
Dear Eleanor
I've been getting this error for a while. Switching back to ccp4-6.3 would
solve the problem. I guess it's a bug of version 6.4.
Best
Jie
- Original Message -
From: Eleanor Dodson
To: CCP4BB@JISCMAIL.AC.UK
Sent: Tuesday, May 20, 2014 5:26 AM
Subject: [ccp4bb] o
ld
address the problem. It will be included in the next CCP4 update which
will go out tomorrow (Tuesday 17th of December) all being well.
Best wishes,
Ronan
On 10/12/13 01:34, jie liu wrote:
Dear All
I just installed CCP4-6.4 and all the subsequent updates. Now MrBump
failed
with the
Dear All
I just installed CCP4-6.4 and all the subsequent updates. Now MrBump failed
with the following error message:
The program run with command: /usr/local/ccp4-6.4.0/bin/ccp4-python -u
/usr/local/ccp4-6.4.0/bin/mrbump HKLIN
/home/jie/Structures/local/se-p26c8newn6/ccp4_6.3/high_x4c.mtz SEQI
Dear All
I am planning to buy a linux workstation for crystallography. It seems that
Dell does not offer workstations with linux right now. Any good experience to
recommend?
Thank you!
Jie Liu
em. Did I damage the operating system? Could
you please give some advice on how to fix it?
I am anxiously waiting for your help!
Best regards
Jie Liu
? I would like to
have a general idea before going further.
Any input will be greatly appreciated. Have a good weekend!
Jie Liu
PHRI/NJMS/UMDNJ
Dear All
I tried to make a stereo picture using Raster3D installed on a linux box with
the following command:
stereo3d -tiff xxx.tif < xxx.r3d
but got an error message:
stereo3d: normal3d seems to be OK
stereo3d: rendering left eye view
stereo3d: rendering right eye view
stereo3d: joining left a
send a CV and a list of two references to
li...@umdnj.edu
Thank you.
Jie Liu, Ph.D.
PHRI/NJMS/UMDNJ
A postdoctoral position in protein crystallography is available in Dr. Min Lu’s
lab at Public Health Research Institute Center, New Jersey Medical School,
University of Medicine and Dentistry of New Jersey.
Our research mainly focuses on the three-dimensional structures and biological
functio
CYS in order to introduce an intermolecular
disulfide bond to stabilize the biological assembly?
Your input is greatly appreciated!
Jie Liu
uch a bundle or we should start to struggle with the
compilation right now?
Thanks for your attention.
Jie Liu
Charles Ballard wrote:
> Dear All
>
> as we continue our journey up the A65 (towards the heart of
> Yorkshire) we are pleased to announce the release of Clapham (or
> 6.1.0)
I've played around for a while, also read the manual
and googled the internet, but just couldn't find a way
to set up the restraints to the symmetry related atoms
in Refmac5. Could anyone please kindly advice me
how to do that?
Thank you!!!
Jie
Eleanor Dodson wrote:
> It needs Garib to answer t
Dear all
I have a sulfate ion sitting on a 2-fold axis. Should I put in pdb file
one S atom with occu=0.5 and two O atoms with occu=1, or should
I put one S and four O atoms all with occu=0.5?
Thanks for your inputs.
Jie
peptide was expressed in E.Coli
and cleavaged by Formic Acid and Cyanogen Bromide, then
purified by HPLC and lyophilized.
Does anyone have similar experience of a modified N-terminal
throenine? If so, please kindly point to me a reference.
Thank you.
Jie Liu
they are equal in length.
But still, I am wondering if there is an existing program?
Thanks!
Jie
Edward Berry wrote:
> Since Jie Liu is talking about coiled coils and heptad
> repeat, I think what may be needed is the displacement
> along the bundle axis. So an expression for the be
Dear CCP4ers:
Does anyone know an existing program to calculate the lateral
displacement---the vertical offset, measured as a fraction of the
the heptad repeat---of neighboring helices in coiled coils or helix
bundles, either parallel or antiparallel?
Your input is greatly appreciated.
Have a n
longs to the 4th residue)
1st Glycine
Could anyone help me to define the LINK record in the hearder of the PDB
file
or whatever restraints or whatever library needed for carrying out
refinement
with Refmac5? I have been playing around for a while and got no success.
Thanks in advance!
Jie Liu
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