Hi
I also encountered the same problem after recent updates (not the most
recent one, but a couple of updates back). Choosing to run old-truncate will
get it around.
Best wishes
Jie
----- Original Message -----
From: "<Stephen Carr>" <stephen.c...@rc-harwell.ac.uk>
To: <CCP4BB@JISCMAIL.AC.UK>
Sent: Thursday, June 19, 2014 1:11 PM
Subject: [ccp4bb] ctruncate error
Dear CCP4bb,
I am experiencing an unusual error when running truncate. The program
appears to be converting I's to F's, but then failing to output them in the
resulting mtz file, see mtzdump output below:
Col Sort Min Max Num % Mean Mean Resolution Type
Column
num order Missing complete abs. Low High
label
1 ASC 0 26 0 100.00 12.6 12.6 79.95 3.00 H
H
2 NONE 0 15 0 100.00 4.3 4.3 79.95 3.00 H
K
3 NONE -42 42 0 100.00 0.7 16.0 79.95 3.00 H
L
4 NONE 0.0 19.0 0 100.00 9.56 9.56 79.95 3.00 I
FreeR_flag
5 BOTH ? ? 12968 0.00 ? ? -999.00 0.00 F
F_delta16
6 BOTH ? ? 12968 0.00 ? ? -999.00 0.00 Q
SIGF_delta16
7 BOTH 0.0 0.0 25 99.81 0.00 0.00 42.22 3.00 D
DANO_delta16
8 BOTH 0.0 0.0 11253 13.22 0.00 0.00 42.22 3.00 Q
SIGDANO_delta16
9 BOTH ? ? 12968 0.00 ? ? -999.00 0.00 G
F_delta16(+)
10 BOTH ? ? 12968 0.00 ? ? -999.00 0.00 L
SIGF_delta16(+)
11 BOTH ? ? 12968 0.00 ? ? -999.00 0.00 G
F_delta16(-)
12 BOTH ? ? 12968 0.00 ? ? -999.00 0.00 L
SIGF_delta16(-)
13 BOTH 0 0 25 99.81 0.0 0.0 42.22 3.00 Y
ISYM_delta16
14 NONE -8.9 72479.2 25 99.81 198.34 198.44 42.22 3.00 J
IMEAN_delta16
15 NONE 0.6 3135.7 25 99.81 5.25 5.25 42.22 3.00 Q
SIGIMEAN_delta16
16 NONE -10.8 72479.2 25 99.81 198.18 198.37 42.22 3.00 K
I_delta16(+)
17 NONE 0.0 3135.7 25 99.81 6.79 6.79 42.22 3.00 M
SIGI_delta16(+)
18 NONE -9.5 72479.2 25 99.81 198.30 198.47 42.22 3.00 K
I_delta16(-)
19 NONE 0.0 3135.7 25 99.81 6.70 6.70 42.22 3.00 M
SIGI_delta16(-)
No. of reflections used in FILE STATISTICS 12968
The truncate log file shows no obvious errors apart from the cumulative
intensity plot which indicates no reflections, all other diagnostic
indicators for data quality seem to suggest everything is ok. I get the
error with both ctruncate and truncate and also automatically as part of the
scaling/merging pipelines. The data were processed with imosflm, scaled
with aimless with neither flagging any errors with the data. I am running
CCP4 6.4.0 on a linux box (Centos 6) and have installed the latest updates.
Any suggestions as to what the fault might be and how to get around it would
be greatly appreciated.
best wishes,
Steve
Dr Stephen Carr
Research Complex at Harwell (RCaH)
Rutherford Appleton Laboratory
Harwell Oxford
Didcot
Oxon OX11 0FA
United Kingdom
Email stephen.c...@rc-harwell.ac.uk
tel 01235 567717
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