Dear colleagues,
Thank you to everyone who responded.
Here is a short summary:
1.Refmac using isotropic B-factors with tight restraints
2. Add a TLS in refinement may help.
Best wishes,
chenzhonghao...@163.com
From: Tom Peat
Date: 2024-01-07 10:57
To: CCP4BB
Subject: Re: [ccp4bb
structure if I used isotropic
temperature refinement.
Did refmac5 or other programs in CCP4 have similar functions like
one_adp_group_per_residue or two_adp_groups_per_residue in Phenix?
Any help would be highly appreciated!
chenzhonghao...@163.com
From: Eleanor Dodson
Date: 2024-01-05 23
Dear CCP4 community,
I found that Refmac5 refined the temperature factor only by four modes (see
the bottom of the attached figure). However, no
grouped B-factor (one or two per residue instead of one per atom) was found.
Actually, PHENIX and CNS can do it. But we are not familiar with both
Dear Raj,
Usually, fo-fc is the best way to show.
best,
chenzhonghao...@163.com
From: raj kumar
Date: 2017-12-19 13:07
To: CCP4BB
Subject: [ccp4bb] Electron density map for publications
Hi
Which electron density map (fo-fc or 2fo-fc) should I use for representing the
density of the
.
chenzhonghao...@163.com
From: Tanner, John J.
Date: 2017-07-18 00:34
To: CCP4BB
Subject: Re: [ccp4bb] A challenging Molecular replacement
Richard,
I can’t help you with 5XQL.
However, I can point out a recent structure from my group that might be useful
for teaching. The structure was solved by MR
Dear all,
I want to download PROMOTIF v 2.0 from your ftp server(IP address
128.40.46.11).
However, I can not visit it (ftp://128.40.46.11) because the ftp server was
shut down.
Moreover, I also sent emails to g...@uk.ac.ucl.bioc.bsm or
thorn...@uk.ac.ucl.bioc.bsm. However, both emails were
Dear Schulze-Gahmen,
Which version of coot did you use?
For me, Coot 0.8.4 works well in windows 8.1 system. It does not have a
question in optimizing nucleic acids.
best,
Zhonghao
chenzhonghao...@163.com
From: Ursula Schulze-Gahmen
Date: 2017-03-25 04:35
To: CCP4BB
Subject: [ccp4bb
