Hi,
Your file name contains space: "E1 11-2-25 URAC.tif".
This is not allowed. Please remove space from file names.
Also please don't use screenshots to show textual error messages.
Copy and paste them as texts next time.
Best regards,
Takanori Nakane
On 2025/03/11 22:18, Pree
Hi,
I cannot reproduce your problem.
I did (with RELION 5.0):
1. Import: make sure to set "Are these multi-frame movies:" No.
2. Manual picking: select "Import/jobXXX/micrographs.star".
Best regards,
Takanori Nakane
On 3/11/25 20:29, Preeti wrote:
Hello every
particles, not frames.
Or could the problem be related to --only_do_unfinished issue discussed
in: https://github.com/3dem/relion/issues/985 ?
I believe Polish does not have this problem.
Best regards,
Takanori Nakane
On 14.11.24 13:58, Takanori Nakane wrote:
[EXTERNAL EMAIL - USE CAUTION
ion of a job.
In case of doubts, you can kill and continue the job.
Best regards,
Takanori Nakane
On 11/14/24 21:49, Leonid Sazanov wrote:
Hi, we are having some trouble finishing the polishing step. There are about 11k movies from K3
super-resolution pixel 0.53, motion-corrected in reli
particular dataset?
A very similar issue was reported in
https://github.com/3dem/relion/issues/1056
but I do not know what is the cause at the moment.
Best regards,
Takanori Nakane
On 12/23/23 03:31, Srivastava, Dhiraj wrote:
Hi
I am trying to use relion and I am getting error when trying to use mpi
e.
> TIFFFetchDirectory: Can not read TIFF directory count.
> TIFFReadDirectory: Failed to read directory at offset 152370858.
These are real errors. Some of your TIFF files are corrupted (typically
truncated).
Look at the file sizes and remove those significantly smaller than the
others.
hkl of CrystFEL. Don't use it.
The documentations warn it.
http://www.desy.de/~twhite/crystfel/manual-process_hkl.html
http://www.desy.de/~twhite/crystfel/bestpractice.html
Best regards,
Takanori Nakane
> What does snr mean?
> Eleanor
> On 18 April 2018 at 00:27, Gihan Ketawala wrote
Hi,
"dials.reciprocal_space_viewer" is very useful to identify multiple lattices.
For quasicrystal and modulated crystals, "dials.rs_mapper" is also very
useful.
Best regards,
Takanori Nakane
> Have you tried microseeding of these sphere crystals? It may help t
Hi Johannes,
On RHEL 6.7, setting "http_proxy" was sufficient.
Best regards,
Takanori Nakane
On 2018/01/09 13:18, Johannes Cramer wrote:
Dear CCP4bb,
does anyone know how I can make the ccp4 package manager use a proxy for
downloading in Linux 64bit versions?
This would make inst
should be more accurate and "reliable" than
that calculated from a dataset with multiplicity 2, but this difference
is ignored in t-test.)
Did anyone try this?
Best regards,
Takanori Nakane
On 2015年07月03日 04:41, Tim Gruene wrote:
Hi Robbie,
I have been wondering how much information would
Hi,
I have successfully forwarded OpenGL applications like PyMOL
using VirtualGL http://www.virtualgl.org/.
Takanori Nakane
On 2015年07月02日 14:09, Dale Tronrud wrote:
Then I would worry that your local X11 server doesn't support glut.
3d graphics is an additional layer to the pro
Hi Faisal,
Recordings of MRC-LMB EM-course last year are available at
http://www2.mrc-lmb.cam.ac.uk/groups/scheres/impact.html
Best regards,
Takanori Nakane
On 2015/05/20 2:36, Yi-Wei Chang wrote:
Hi Faisal,
Here is a new series of lecture video called "Getting Started in
Cryo-EM&quo
Dear Andrew,
This is not very CCP4-way, but you can use:
phenix.fetch_pdb --maps 4wz7
It took about 10 minutes on my PC.
Best regards,
Takanori Nakane
On 2015年04月28日 18:35, Andrew Leslie wrote:
I am trying to get coordinates and maps into COOT for a PDB entry that is only
in mmcif format
Hi,
Another example is 2ZW3, again a membrane protein.
Best regards,
Takanori Nakane
On 2015/02/06 21:11, Adrian Goldman wrote:
Our recent membrane protein structure (4av3) doesn’t have much in the way of
contacts either, as is characteristic of type 1 membrane protein crystals
settings from 2014.
Best regards,
Takanori Nakane
On 2015/01/08 19:34, Harry Powell wrote:
I'm not sure the "what's new" sessions are webcast - try again when the main
sessions are due to start at 11 am local time (in about 25 minutes time).
Harry
--
Dr Harry Powell, MRC L
Hi,
xdsme has xds2mos.py script.
https://code.google.com/p/xdsme/
https://code.google.com/p/xdsme/source/browse/XOconv/xds2mos.py
Best regards,
Takanori Nakane
On 2014/12/29 6:37, Igor Petrik wrote:
I am working on a small project which requires me to obtain the proper
orientation of a
e twin lattice (assuming the
> data is twinned), obtain the same flag. This includes both the
> possibility of merohedral and pseudomerohedral twinning.
Best regards,
Takanori Nakane
(2014/07/07 7:31), Yamei Yu wrote:
Hi all,
Is there anything that needed to pay attention to while choosing R
Dear Greg,
The following might work:
set cylinder_shader_ff_workaround, on
Best regards,
Takanori Nakane
Hi,
> Anyone please tell me
> the name of programme which can be used to draw enzyme reaction
mechanism (
> like Sn1 and Sn2). Your kind help will be much appreciated
BKChem is also free software.
http://bkchem.zirael.org/
Takanori Nakane
on registers, the faster it runs.
Best regards,
Takanori Nakane
view is a nice viewer, too.
http://www.molsoft.com/iMolview.html
Best regards,
Takanori Nakane
P.S. For Android users, I am developing NDKmol.
https://market.android.com/details?id=jp.sfjp.webglmol.NDKmol
f you want to put it on Web pages, you can use Jmol.
GLmol, a WebGL/Javascript based viewer I am developing, can
also show packing and unit cell if symmetry operations are
defined in REMARK record.
http://webglmol.sourceforge.jp/index-en.html
Takanori Nakane
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