Re: [ccp4bb] CCp4i2 not starting up

2024-11-20 Thread Stuart McNicholas
Oh, dear, that's disappointing. I will get back to you shortly. On Tue, 19 Nov 2024 at 12:58, Otsile Mojanaga wrote: > > Dear Stuart > That's okay, thank you for all your assistance so far. > I tried the fix and it worked, but for some reason the backup file is only > importing 1 or no jobs for

Re: [ccp4bb] Dual occupancy refinement in REFMAC5

2024-11-20 Thread Martin Malý
Dear Kyle, Can you please send us (or at least to me if it is subject of confidentiality) the keywords which worked well for you? I would like to improve the GUI. Cheers, Martin On 20/11/2024 15:54, Kyle Gregory wrote: Dear all, Thank you for your helpful replies. The keyword option worked

Re: [ccp4bb] Dual occupancy refinement in REFMAC5

2024-11-20 Thread Kyle Gregory
Hi James, Thank you for this reply. Yes, I did want to try this but for some reason when I add to the group ID list I cannot change the group ID from 1 to 2 so I cannot define conformer A and B as separate group IDs. I wonder if this is a bug? Kind regards, Kyle ___

Re: [ccp4bb] Dual occupancy refinement in REFMAC5

2024-11-20 Thread Kyle Gregory
Dear all, Thank you for your helpful replies. The keyword option worked fine for me. I think there is a bug in the GUI. Kind regards, Kyle From: CCP4 bulletin board on behalf of Kyle Gregory <3632e92fcc15-dmarc-requ...@jiscmail.ac.uk> Sent: 20 November 2024

Re: [ccp4bb] Dual occupancy refinement in REFMAC5

2024-11-20 Thread James Holton
I've never used this GUI, but I know that under the hood you want each A/B to have its own group ID and then specify that the two groups sum to one.  The keywords look like this: occupancy refine occupancy group id 1 chain A residue 318 alt A occupancy group id 2 chain A residue 318 alt B occ

Re: [ccp4bb] Dual occupancy refinement in REFMAC5

2024-11-20 Thread Martin Malý
Dear all, I am wondering - isn't such a line missing? occupancy refine ncycle 5 (another number of cycles than 5 can be specified) We will implement specification of the number of occupancy refinement cycles in the i2 task. By the way, me (as a user) prefer to set occupancy manually to get B

[ccp4bb] Post-doctoral Fellowship (M/F) on the biochemistry and structural biology in Lyon, France

2024-11-20 Thread Laurent Terradot
Dear all, A Post-doctoral fellowship is available in our team. See details below. Best regards, Laurent An ANR-funded post-doctoral position is available in the “Structural Biology of Bacterial Macromolecular Complexes” team at Molecular Microbiology and Structural Biochemistry Laboratory (