Sorry, I think the answer is on Colin's reply.
Best wishes, Jon Cooper.
jon.b.coo...@protonmail.com
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Original Message
On 26/09/2024 17:56, Jon Cooper wrote:
> Another thing I am curious about is how a map can look good at 5.5 sigma
> because an X-
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Another thing I am curious about is how a map can look good at 5.5 sigma
because an X-ray one probably wouldn't unless it was atomic resolution. Don't
worry if there isn't a simple explanation.
Best wishes, Jon Cooper.
jon.b.coo...@protonmail.com
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Original
Dear Anna,
The absolute map value that Coot displays – i.e. the 0.115 in your “0.115 V =
5.5 rmsd” – is the raw value from the map file, and should be equivalent to the
“Level” shown in the Volume Viewer in Chimera or ChimeraX (as long as the step
value is set to 1).
If you set the contour lev
Hello Anna
I have no idea why the map format is unacceptable without more details of how
you created the file. Presumably it is in ccp4 format, but there are others. Is
it a binary file or humanly readable? It's EM so cell dimensions are
artificial, etc, I think.
Best wishes, Jon Cooper.
jon.b
Some of you keen people may have noticed that the button to register is missing
from the SW website!!
Please use https://cvent.me/bxlPqr to register until it appears.
Regards
Karen McIntyre
CCP4 Project Administrator
CCP4 ED&I Champion
UKRI-STFC
Rutherford Appleton Laboratory
Harwell Campus
Di
Dear all,
Registration is now open for the 2025 CCP4 study weekend entitled " Using
software, AI and other methods to advance macromolecular models".
This year the CCP4 Study Weekend will be held as a hybrid event from the 7th to
9th January 2025, enabling people to choose whether to attend in-
Dear all,
I am depositing my first cryoEM structure and I am facing the following
problem concerning the contour level of the map.
Briefly, where do I find the value for the contour level to associate to
the uploaded map in Coot?
Long story: I worked with coot and I am happy with my map when I se
