On 7/18/24 15:33, Andrea Smith wrote:
I have a “green blob” in my map and I want to create a picture of it.
What is the best option to do this?
[...]
Is printscreen from Coot my only option?
Density figures from Coot 1 can look, if I may be so bold, pretty good.
See, for example Catapano
Hi Andrea,
Either CCP4mg or ChimeraX (with the Clipper plugin) can read .mtz files
directly and create maps to output publication-quality blob pictures.
Best,
Dave
Dr David C. Briggs CSci MRSB
Principal Laboratory Research Scientist
Signalling and Structural Biology Lab
The Francis Crick
We are pleased to announce an exciting opportunity for a Principal Investigator
to join the NOVA University School of Science and Technology (Caparica, Lisbon
Area, Portugal) as Leader of the Research Team, hired (on a permanent basis)
under the ERA Chair project, CryoEM@NOVA, funded by the HORI
I use ccp4 to create Fo-Fc or 2Fo-Fc omit maps, then read them into Pymol
and display them with the isomesh command with an appropriate carve radius.
That might pick up an unmodelled blob.
__
Roger Rowlett
On Thu, Jul 18, 2024, 10:33 AM Andrea Smith
wrote:
> Hi,
>
>
>
> I have a
Hi,
I have a “green blob” in my map and I want to create a picture of it. What is
the best option to do this?
Normally, to make figures of maps, I use pymol's "display ccp4 maps", but pymol
shows maps around “site”. So if I don't fit anything into my blob, I can't
create a “site” and displa
Hi
The simple answer is to estimate your own value (as we always used to do before
I coded this up about 20 years ago…) by overlaying a prediction over the images
and determining what value of mosaicity gives the best coverage. It may also be
worthwhile changing the “mosaic block size” in the “
Hi,
I had recently the same issue. I restarted my system, repeated the task and
then it worked.
Best,
Andrea
On Thursday, July 18, 2024 03:42 CEST, Dale C
<8378c932659c-dmarc-requ...@jiscmail.ac.uk> wrote:
Hi all,
I am currently trying to generate a Table 1 in Phenix. I currently h
