Hello All,
Further to my earlier email..I am running ccp4 6.4 , on 64 bit Redhat Linux
6.5
I cannot see loggraphs with View-Files-From-Job - View Log Graphs--
That throws an error in the shell. This is the same error I see when coot
finishes refmac5 as well.
It seems that the loggraph tcl scrip
Hi ,
I have just switched to a new computer with ccp4 6.4 and binary coot
installed from Paul Emsleys nightlies.
When I run refmac5 inside coot or run refmac5 inside ccp4, the loggraph
does not pop-up at the end of a refmac run. I looked everywhere in settings
inside ccp4i or inside coot and coul
I’m not sure what went wrong, but I have reindexed everything at my end and
tested it with this command:
sudo apt-get --reinstall install gcc48-shlibs
You might want to delete the file
/sw/var/cache/apt/archives/gcc48-shlibs_4.8.2-1001_darwin-x86%5f64.deb
first in case the download became cor
Hi All
I'm trying to install a coot for my new Mac. I followed the instructions
from http://scottlab.ucsc.edu/~wgscott/xtal/wiki/index.php/Fink_for_10.9
when I execute the command :sudo apt-get install coot
I got two errors:
Get:23 http://psbmini.ucsc.edu stable/main gcc48-shlibs 4.8.2-1001
[33.0M
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Hi Bernhard,
I may not know what students know as vectors. I was told at school
that the elements of a vector space are called vectors, and this was
actually repeated at university. Later I realised that when you
consider e.g. coordinate triplets as v
Now we are drilling down to the real issue (thanks, Alexei, with whom I had
almost the same
discussion off board earlier):
The fact is (and here I follow in some form Ian's line of argument) that
geometric
vectors in R2 and R3 have properties beyond the axiomatic definition of a
vector space.
Ala
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Dear Ian,
I don't see the problem because I did not substitute 'scalar' for
'complex number'.
I prefer a more practical approach, so when it is helpful to describe
a problem by using the vector space (C, +), I shall do so, and in this
context I shall
On 2 April 2014 13:39, Ian Tickle wrote:
> scalar satisfies other axioms (e.g. multiplication & addition) that a
> vector doesn't.
Sorry typo:
A scalar satisfies other axioms (e.g. multiplication & _division_) that a
vector doesn't.
I.
On 2 April 2014 12:49, Tim Gruene wrote:
> P.S.: complex numbers together with the operation '+' defined in the
> canonical way fulfill the axioms of a vector space, hence complex
> number are vectors. If you also take the operation '*' into account,
> defined in the canonical way, (C, +, *) fulf
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Dear Bernhard,
I don't need to because the vector product is not a requirement for a
vector space.
It is something very specific to R^3, i.e. in most vector spaces you
would have trouble defining a vector product - do you know the angle
between two po
>complex numbers together with the operation '+' defined in the canonical
way fulfill the axioms of a vector space, hence complex number are vectors.
Axiomatically yes but could you please define the vector products for
complex numbers?
Thx, BR
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Hi Ed,
your explanation E = rho(r)exp(2pi i (wt - r.S)) is nearly correct, as
Blundell and Johnson are nearly correct. In Physics any function
f(x,y,z,t) depending on three coordinates and time that can be
expressed such that f(x,y,z,t) = f(\vec k.\ve
Dear all,
We have the following X-ray equipment available:
1) Rigaku ‘micromax 007’ X-ray generator with Varimax HR osmic mirror,
radiation enclosure and interlocks
2) Mar345 imaging plate detector
3) Oxford Cryosystems cryostream ‘600 series’ including dry air unit ‘AD41’ and
60L dewar
4) Prot
Hi,
See PMID: 23142346, especially supplementary table 1c.
Best,
-jerome
Sent from my iPad
> On Apr 2, 2014, at 6:17 AM, "Wenhe" wrote:
>
> Wenhe
Dear members,
Does anyone have an example of a pair of protein structures in phosphorylated
(natural phosphorylation and mutation mimic) and un-phosphorylated states? ——
particularly they have distinct conformational difference. Thank you.
Kind regards,
Wenhe
The actual "wave term"
A/(R-r) * exp(i 2Pi (kR - vt))
- where R is a vector from the origin of a chosen coordinate system to
the detector, r is a vector from from the origin to the electron, k is a
wave vector of the scattered wave, and A is a vector proportional to the
E vector of the incident
Assistant Researcher Position in Membrane Protein Structural Biology available
at Lund University, Sweden.
Type of employment: Limit of tenure, 1 year with possible extension for 1 year
Extent: 100 %
Location: Department of Experimental Medical Science, Lund University, Sweden
First day of employ
Dear Nazia,
My first suggestion would be to take your crystals to a synchrotron. With the
same crystals, you may get a precious 0.5 Å resolution more.
Concerning the processing, I agree with Jürgen that the beam center is the most
frequent culprit. The second thing to do is to make sure that you
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