Hello everyone,
I was wondering if there is any software out there that can be used for
multiple structure superimposition and output some graphical plot of residues
based on their deviation from the reference molecule. I want to highlight how
entire residues undergo conformational change in th
Dear all,
I want to know your suggestions about current protein sequence alignment
programs. It seems that different programs give different alignment results
such as from analysis of Clustal W and MULTALIN. Thanks for any input or
comments.
Best regards,
Donghui
Dear CCP4ers,
I have a problem when I use DM to do NCS averaging. If I input 9 NCS
averaging masks, DM works OK. However, if I input 10 NCS averaging masks,
DM can not open input map file. The masks should be OK because they are
generated by the same method. Do you have any idea how to solve the p
Dear Colleagues,
A postdoctoral position is available in the Al-Bassam Laboratory at UC-Davis,
studying the structural basis of tubulin assembly and disassembly regulators
into dynamic microtubules. Our laboratory focuses on combining Structural
biology and Single molecule biophysics approach
I think "IGNORE" is the wrong word here, but as many have pointed out, you may
be able to deal with this situation.
Besides the many good tips that been given, I think EVAL15 (I started reading
the paper on it) should be able to deal with some overlaps pretty succesfully.
I don't know where the
On Mon, 2012-05-14 at 13:01 -0400, Bosch, Juergen wrote:
> Although the question was asked for Mosflm I would like to briefly
> p[oint out that you might be able to also rescue your data by using a
> program that does 3D profile fitting e.g. d*trek and XDS.
For the sake of completeness (and nothi
Although the question was asked for Mosflm I would like to briefly p[oint out
that you might be able to also rescue your data by using a program that does 3D
profile fitting e.g. d*trek and XDS.
However as Andrew pointed out the shoot first try to fix it later mentality
might have ruined the po
Dear All,
I would like to inform you that 2 postdoctoral positions are available
at the EMBL Hamburg Unit in the research group of Matthias Wilmanns.
I attach brief descriptions of the Vacancy Notices below. Deadline for
application is 15th June 2012.
Further Detailed Information can be found u
Hi Anita,
You don't state the WL of the melting and "back folding" CDs, I'm guessing it's
around 210 nm?
In any case, the "refolding" that you see might be just the formation of
aggregates. For saying if it's really refolding you'd need a new spectrum WL vs
AU in the end of the "reverse therm
On Sat, 2012-05-12 at 19:28 +0100, Yuri Pompeu wrote:
> Dear community,
> I am probably disturbing a sleeping bear
definitely so
> Reading the thread on hydrogen deposition with the model, I came accross
> several arguments that make sense on their own, but when put together are
> puzzling and
On Sat, 2012-05-12 at 08:48 -0400, Dave Roberts wrote:
> However, I just want to make sure the metal environment is not due to
> the fact that I did something wrong in my refinement script - thus
> making it tetrahedral because it was refined as tetrahedral.
...
> I don't use CCP4 for refinement,
A position in crystallization is now available at the New York Structural
Genomics Research Consortium (NYSGRC; www.nysgrc.org). The NYSGRC is one of
four NIH-funded high throughout structure determination centers for PSI:Biology.
Extensive macromolecular cystallization experience is an absolute
[Just to correct a few issue with my earlier announcement here it is again with
subject line!]
Dear All,
I would like to draw your attention to the DIALS-I workshop on X-ray
Diffraction Data Analysis to be held at Diamond Light Source on June 12th/13th
2012.
For information about the programme
Dear All,
I have been informed that you might need to try this link instead.
http://www.diamond.ac.uk/Home/Events/DIALS-1/
Apparently, the added 'www' makes a difference when outside of Diamond. Sorry
about that.
Gwyndaf
From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of G
Dear All,
I would like to draw your attention to the DIALS-I workshop on X-ray
Diffraction Data Analysis to be held at Diamond Light Source on June 12th/13th
2012.
For information about the programme and how to register for the workshop please
go to the home page http://diamond.ac.uk/Home/Even
Dear all,
this is a reminder that the deadline for application to the EMBO Practical
Course
"Protein expression, purification and characterization" (PEPC8) is on Sunday
the 20th of May.
The course will be held at EMBL Hamburg from the 3rd of September until the
11th of September 2012.
This
Dear Xinghua,
Other have already commented on the fact that
if the spots are overlapping, even if you adjust some parameters to be
able to integrate the data and get a reasonably complete data set, the
resulting intensities will have some systematic errors that may ca
Hi
This is all good advice, but there is more that you could do if
you're desperate to use these images.
Having made sure that your spots on the images are not actually
overlapping (i.e. by looking closely at the images), but just flagged
as overlapping in iMosflm, you may be able (i.e. n
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