Re: [ccp4bb] Database access failure during program execution SOLVED

2011-10-06 Thread Jobichen Chacko
Dear All, The .def file was absent in the CCP4_DATABASE sub folder (in the project directory) which resulted in the error. I am not sure how it happened. I copied the def file from another system and pasted in that folder and now it is running. I even made a new project under a new directory and

Re: [ccp4bb] Database access failure during program execution

2011-10-06 Thread Jobichen Chacko
Dear All, I even tried to remove the whole ccp4i directory and installed it fresh using the same tar file. But this problem is recurring again. It seems some bug is already installed in the system which prevents the execution of the program. I searched in the CCP4 page and found some info. That pa

Re: [ccp4bb] not so good news (Steve Jobs RIP)

2011-10-06 Thread Prince, D Bryan
I thought I would have nothing to say about this topic, but I am sitting here at my desk listing to my iPod, remembering fondly my apple IIc computer I started with in elementary school. I would like to share a story with you, if you would be kind enough to listen. I have a son who is severely dev

Re: [ccp4bb] Database access failure during program execution

2011-10-06 Thread Ed Pozharski
On Wed, 2011-10-05 at 17:36 -0500, Jon Schuermann wrote: > If I'm not mistaken it is caused by /tmp/'username' not existing or > being writable... > > Jon > I can't reproduce this behavior by removing writing permissions from /tmp/$USER. ccp4i starts without a complaint (I guess I'd get into t

[ccp4bb] Postdoc in novel technique development at Diamond Light Source

2011-10-06 Thread elizabeth . duke
Dear All This is rather off topic for the CCP4 BB but I would like to draw people's attention to developments currently taking place at diamond. We require a postdoctoral scientist to join an exciting and innovative project to develop methods associated with the soft X-ray imaging of vitrified,

Re: [ccp4bb] Overlapmap

2011-10-06 Thread Eleanor Dodson
Adam, I do know how to use sfall atmmap Eleanor On 10/05/2011 02:40 PM, Ian Tickle wrote: Adam, sorry I don't use overlapmap, for the reasons you mention (and many others!). In fact I decided it was in such a mess that it was irrecoverable & so I wrote my own program EDSTATS to do all all the

Re: [ccp4bb] Vivaspin vs Amicon Ultra

2011-10-06 Thread Claudia Binda
Hi, we currently use Amicon Ultra with some proteins, but with some others we also have seen precipitation problems. In those cases we were happy with Vivacon (from Sartorius as well). They are thought for DNA but they work also with proteins. They resemble the Centricon devices which were previous

Re: [ccp4bb] not so good news (Steve Jobs RIP)

2011-10-06 Thread Richard Gillilan
Jobs and Apple not only deeply shaped my career, but also my son's path as well. I bought an Apple II+ with my first Summer's earnings as an undergraduate lab assistant in organic chemistry in the very early 80's. Spent winter break writing a printer driver in Apple 6502 code so I could plot mol

Re: [ccp4bb] not so good news (Steve Jobs RIP)

2011-10-06 Thread Tim Gruene
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 10/06/2011 06:54 AM, Ashley Buckle wrote: > [...] > Sent from my iPhone How appropriate ;-) > [...] - -- - -- Dr Tim Gruene Institut fuer anorganische Chemie Tammannstr. 4 D-37077 Goettingen GPG Key ID = A46BEE1A -

[ccp4bb] Post-doctoral position on RIG-I like helicases at EMBL Grenoble

2011-10-06 Thread Stephen Cusack
A Postdoctoral Fellowship in the Structural Biology of RIG-I like helicases is available in the group of Dr. Stephen Cusack at the EMBL Grenoble Outstation. For more details and applications see http://ig14.i-grasp.com//fe/tpl_embl01.asp?newms=jj&id=46569&aid=15470 The group of Stephen Cusack