Re: [Bioc-devel] BiocCheckGitClone error

2020-09-23 Thread Shepherd, Lori
Carlton Streets Buffalo, New York 14263 From: Emilie Secherre Sent: Wednesday, September 23, 2020 3:35 AM To: Shepherd, Lori Cc: bioc-devel@r-project.org Subject: Re: [Bioc-devel] BiocCheckGitClone error I still couldn't fix the issue, therefore is th

Re: [Bioc-devel] BiocCheckGitClone error

2020-09-23 Thread Emilie Secherre
re still listed >> in the .gitignore then they would be ignored. >> >> Lori Shepherd >> >> Bioconductor Core Team >> >> Roswell Park Comprehensive Cancer Center >> >> Department of Biostatistics & Bioinformatics >> >> Elm & Carlton S

Re: [Bioc-devel] BiocCheckGitClone error

2020-09-22 Thread Emilie Secherre
Bioconductor Core Team > > Roswell Park Comprehensive Cancer Center > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > -- > *From:* Emilie Secherre > *Sent:* Tuesday, September 2

Re: [Bioc-devel] BiocCheckGitClone error

2020-09-22 Thread Shepherd, Lori
Subject: Re: [Bioc-devel] BiocCheckGitClone error This time I used Git clone folder. Though, when I push famat package in github, .gitignore file isn't uploaded, so I created a .gitignore file in the github repository with "famat.Rproj" in it before pushing the whole packa

Re: [Bioc-devel] BiocCheckGitClone error

2020-09-22 Thread Emilie Secherre
This time I used Git clone folder. Though, when I push famat package in github, .gitignore file isn't uploaded, so I created a .gitignore file in the github repository with "famat.Rproj" in it before pushing the whole package. Unfortunately, the "famat.Rproj" file is still in the git clone folder..

Re: [Bioc-devel] BiocCheckGitClone error

2020-09-22 Thread Shepherd, Lori
We run BiocCheckGitClone on a raw clone of the github directory. If you are running it locally and had .gitignored those files before pushing to github then you should be okay. A way to test this would be to do a git clone​ of your github repository, in a different, temporary location to se