I still couldn't fix the issue, therefore is that allowed to just don't push the .Rproj file in github ? Thanks in advance for your answer Emilie
<https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail> Garanti sans virus. www.avast.com <https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail> <#DAB4FAD8-2DD7-40BB-A1B8-4E2AA1F9FDF2> Le mar. 22 sept. 2020 à 15:36, Emilie Secherre <emiseche...@gmail.com> a écrit : > I pushed famat.Rproj after .gitignore was created and pushed with > "famat.Rproj" in it. That's why i don't understand why famat.Rproj is still > in the clone folder. > > > <https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail> > Garanti > sans virus. www.avast.com > <https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail> > <#m_5808152295650690142_DAB4FAD8-2DD7-40BB-A1B8-4E2AA1F9FDF2> > > Le mar. 22 sept. 2020 à 15:32, Shepherd, Lori < > lori.sheph...@roswellpark.org> a écrit : > >> So I think the file probably got pushed up before you added it to >> .gitignore. So you would probably want to git rm the files, commit, and >> push. Then you could add them back in after and if they were still listed >> in the .gitignore then they would be ignored. >> >> Lori Shepherd >> >> Bioconductor Core Team >> >> Roswell Park Comprehensive Cancer Center >> >> Department of Biostatistics & Bioinformatics >> >> Elm & Carlton Streets >> >> Buffalo, New York 14263 >> ------------------------------ >> *From:* Emilie Secherre <emiseche...@gmail.com> >> *Sent:* Tuesday, September 22, 2020 9:04 AM >> *To:* Shepherd, Lori <lori.sheph...@roswellpark.org> >> *Cc:* bioc-devel@r-project.org <bioc-devel@r-project.org> >> *Subject:* Re: [Bioc-devel] BiocCheckGitClone error >> >> This time I used Git clone folder. Though, when I push famat package in >> github, .gitignore file isn't uploaded, so I created a .gitignore file in >> the github repository with "famat.Rproj" in it before pushing the whole >> package. Unfortunately, the "famat.Rproj" file is still in the git clone >> folder... >> >> >> <https://secure-web.cisco.com/1kUcjeK1l5uJLWUgk1BEPSSsClwf6nXlSgM5k14zf32z1bnZJmqgWRn1b1BpkEBSNysDnSMiukeI70FhY3w7_9VXHSZxuSFyPsoZOCeYdt6XZmvRyG1y-kHEda2Ffe3Vy6uhqWccL_pE3Ru9s5EQyoBoVuNEs56AUlsD4cWsBjcfXiCDL6EBRbgmOIwR9l9iRR6VAMTQ5o8azDl8DAocIGa6H7VwNFbowLLmnLuTIUqMKK0TiEcIPataXipooaiyDu95bM1X0bo-7BHtGzt2UocrIT9TTtSxudid7Dk4nuBjLFCRbpxuVJYLfsEwA0-hU/https%3A%2F%2Fwww.avast.com%2Fsig-email%3Futm_medium%3Demail%26utm_source%3Dlink%26utm_campaign%3Dsig-email%26utm_content%3Dwebmail> >> Garanti >> sans virus. www.avast.com >> <https://secure-web.cisco.com/1kUcjeK1l5uJLWUgk1BEPSSsClwf6nXlSgM5k14zf32z1bnZJmqgWRn1b1BpkEBSNysDnSMiukeI70FhY3w7_9VXHSZxuSFyPsoZOCeYdt6XZmvRyG1y-kHEda2Ffe3Vy6uhqWccL_pE3Ru9s5EQyoBoVuNEs56AUlsD4cWsBjcfXiCDL6EBRbgmOIwR9l9iRR6VAMTQ5o8azDl8DAocIGa6H7VwNFbowLLmnLuTIUqMKK0TiEcIPataXipooaiyDu95bM1X0bo-7BHtGzt2UocrIT9TTtSxudid7Dk4nuBjLFCRbpxuVJYLfsEwA0-hU/https%3A%2F%2Fwww.avast.com%2Fsig-email%3Futm_medium%3Demail%26utm_source%3Dlink%26utm_campaign%3Dsig-email%26utm_content%3Dwebmail> >> <#m_5808152295650690142_m_-1353067446180599254_x_DAB4FAD8-2DD7-40BB-A1B8-4E2AA1F9FDF2> >> >> Le mar. 22 sept. 2020 à 14:12, Shepherd, Lori < >> lori.sheph...@roswellpark.org> a écrit : >> >> We run BiocCheckGitClone on a raw clone of the github directory. If you >> are running it locally and had .gitignored those files before pushing to >> github then you should be okay. A way to test this would be to do a git >> clone of your github repository, in a different, temporary location to >> see if those files are still present when you do a git clone and running >> BiocCheckGitClone on that temporary cloned copy. >> >> Cheers >> >> Lori Shepherd >> >> Bioconductor Core Team >> >> Roswell Park Comprehensive Cancer Center >> >> Department of Biostatistics & Bioinformatics >> >> Elm & Carlton Streets >> >> Buffalo, New York 14263 >> ------------------------------ >> *From:* Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of >> Emilie Secherre <emiseche...@gmail.com> >> *Sent:* Tuesday, September 22, 2020 4:57 AM >> *To:* bioc-devel@r-project.org <bioc-devel@r-project.org> >> *Subject:* [Bioc-devel] BiocCheckGitClone error >> >> Hello, >> >> When i run R CMD and BiocCheck, i get no error or warnings. But, when >> running BiocCheckGitClone, i'm getting this error : >> System files found that should not be tracked : famat.Rproj, .Rhistory >> The issue is that both files are in .gitignore, but this error isn't >> removed... I'm using BiocCheckGitClone on the same file as BiocCheck. >> >> Thank you in advance for your answer, >> >> Emilie Secherre >> >> < >> https://secure-web.cisco.com/1lwre-aHHcRizwgWLTysqlxTkQiybIA-Ps00M-PLKpqFVzJ64aTPySscIJyAnB8wINYl6Wsd_ltPJc8U5_1kHh6b6TDxaWvrB9i-FIKc_zu3ZOWI2irLvOWfyB-xEN1-NQq2ZiloDniTzfDEFtTRs87pcEz0oTQNyG5GtwQXpC3M3F2Eox3UixhBzpARysKMIYCbPbVuSmVxzchWnD4j4KgrxbcxPs61hCx0H-GoRXd7K_0oiIFq1wIg4YUAEP_66v4VUR3_ajkfABp01qcaJCnIjKHswCiAKb9Ta_tQTbiTb93glCt883z5FmK3T0pGo/https%3A%2F%2Fwww.avast.com%2Fsig-email%3Futm_medium%3Demail%26utm_source%3Dlink%26utm_campaign%3Dsig-email%26utm_content%3Dwebmail >> > >> Garanti >> sans virus. >> http://secure-web.cisco.com/1dpic_w7RKEppZqqs_Yss0WOlzxlFcgXQS9dTNgAck28Z4H--TRKKnEOu7DkBkYh4uI1v2iDQWoPnb-1lZuxZkxly8iOjadcs_GtP6slHhaA0r3px5xJX0Lyh_eBLQwJLOqvbP3wmQ0uTRem2-wSPhpNzqvnVu1nwNBcDWzN8gievsPXOUg1C0kxueCoPAU-irC58E9JwH1EJtFZINi4UZCHKD5cHwpoMNs5MZHQw4vBH8jyo2TuuuL3K8KeKTxTsGEi11Q2oky72N-x6851KYx7Qb4h2YVlZFKW8Z-SfbBB36f-nlMcb2MT8MhCEKwvT/http%3A%2F%2Fwww.avast.com >> < >> https://secure-web.cisco.com/1lwre-aHHcRizwgWLTysqlxTkQiybIA-Ps00M-PLKpqFVzJ64aTPySscIJyAnB8wINYl6Wsd_ltPJc8U5_1kHh6b6TDxaWvrB9i-FIKc_zu3ZOWI2irLvOWfyB-xEN1-NQq2ZiloDniTzfDEFtTRs87pcEz0oTQNyG5GtwQXpC3M3F2Eox3UixhBzpARysKMIYCbPbVuSmVxzchWnD4j4KgrxbcxPs61hCx0H-GoRXd7K_0oiIFq1wIg4YUAEP_66v4VUR3_ajkfABp01qcaJCnIjKHswCiAKb9Ta_tQTbiTb93glCt883z5FmK3T0pGo/https%3A%2F%2Fwww.avast.com%2Fsig-email%3Futm_medium%3Demail%26utm_source%3Dlink%26utm_campaign%3Dsig-email%26utm_content%3Dwebmail >> > >> <#DAB4FAD8-2DD7-40BB-A1B8-4E2AA1F9FDF2> >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioc-devel@r-project.org mailing list >> >> https://secure-web.cisco.com/1-GUsUWfilq2QbmuQ1z-hcm1ypTsGXBFaIfcc0hfxzMSLdoMG9mj6JC4Wtu9pYCfJOrR38uuWeK6tdCYeogdaDAnlINKU2kll9o7CoUCHCj3g1dpQWDPt36iecit-pF17FYfsWqK-Ys8oHAcX8i9IowIZ0sn36OUtc0Tbc6bu2FRkWM4jpYSiRSRDQuVN5fQQvgd5RBPs-T2yN6uT5WOIXV0j7TCdv5Nawu-ps1-u_Lr8IgcwcbK9ZF8Qdd5ZWwvnLqnyaRybzZP6xGHr7usUF_-7NUTT1OJx6OaEjD9Y99984YMUDWYJkuwKy7SfixwD/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel >> >> >> This email message may contain legally privileged and/or confidential >> information. 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