This time I used Git clone folder. Though, when I push famat package in github, .gitignore file isn't uploaded, so I created a .gitignore file in the github repository with "famat.Rproj" in it before pushing the whole package. Unfortunately, the "famat.Rproj" file is still in the git clone folder...
<https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail> Garanti sans virus. www.avast.com <https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail> <#DAB4FAD8-2DD7-40BB-A1B8-4E2AA1F9FDF2> Le mar. 22 sept. 2020 à 14:12, Shepherd, Lori <lori.sheph...@roswellpark.org> a écrit : > We run BiocCheckGitClone on a raw clone of the github directory. If you > are running it locally and had .gitignored those files before pushing to > github then you should be okay. A way to test this would be to do a git > clone of your github repository, in a different, temporary location to > see if those files are still present when you do a git clone and running > BiocCheckGitClone on that temporary cloned copy. > > Cheers > > Lori Shepherd > > Bioconductor Core Team > > Roswell Park Comprehensive Cancer Center > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > ------------------------------ > *From:* Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Emilie > Secherre <emiseche...@gmail.com> > *Sent:* Tuesday, September 22, 2020 4:57 AM > *To:* bioc-devel@r-project.org <bioc-devel@r-project.org> > *Subject:* [Bioc-devel] BiocCheckGitClone error > > Hello, > > When i run R CMD and BiocCheck, i get no error or warnings. But, when > running BiocCheckGitClone, i'm getting this error : > System files found that should not be tracked : famat.Rproj, .Rhistory > The issue is that both files are in .gitignore, but this error isn't > removed... I'm using BiocCheckGitClone on the same file as BiocCheck. > > Thank you in advance for your answer, > > Emilie Secherre > > < > https://secure-web.cisco.com/1lwre-aHHcRizwgWLTysqlxTkQiybIA-Ps00M-PLKpqFVzJ64aTPySscIJyAnB8wINYl6Wsd_ltPJc8U5_1kHh6b6TDxaWvrB9i-FIKc_zu3ZOWI2irLvOWfyB-xEN1-NQq2ZiloDniTzfDEFtTRs87pcEz0oTQNyG5GtwQXpC3M3F2Eox3UixhBzpARysKMIYCbPbVuSmVxzchWnD4j4KgrxbcxPs61hCx0H-GoRXd7K_0oiIFq1wIg4YUAEP_66v4VUR3_ajkfABp01qcaJCnIjKHswCiAKb9Ta_tQTbiTb93glCt883z5FmK3T0pGo/https%3A%2F%2Fwww.avast.com%2Fsig-email%3Futm_medium%3Demail%26utm_source%3Dlink%26utm_campaign%3Dsig-email%26utm_content%3Dwebmail > > > Garanti > sans virus. > http://secure-web.cisco.com/1dpic_w7RKEppZqqs_Yss0WOlzxlFcgXQS9dTNgAck28Z4H--TRKKnEOu7DkBkYh4uI1v2iDQWoPnb-1lZuxZkxly8iOjadcs_GtP6slHhaA0r3px5xJX0Lyh_eBLQwJLOqvbP3wmQ0uTRem2-wSPhpNzqvnVu1nwNBcDWzN8gievsPXOUg1C0kxueCoPAU-irC58E9JwH1EJtFZINi4UZCHKD5cHwpoMNs5MZHQw4vBH8jyo2TuuuL3K8KeKTxTsGEi11Q2oky72N-x6851KYx7Qb4h2YVlZFKW8Z-SfbBB36f-nlMcb2MT8MhCEKwvT/http%3A%2F%2Fwww.avast.com > < > https://secure-web.cisco.com/1lwre-aHHcRizwgWLTysqlxTkQiybIA-Ps00M-PLKpqFVzJ64aTPySscIJyAnB8wINYl6Wsd_ltPJc8U5_1kHh6b6TDxaWvrB9i-FIKc_zu3ZOWI2irLvOWfyB-xEN1-NQq2ZiloDniTzfDEFtTRs87pcEz0oTQNyG5GtwQXpC3M3F2Eox3UixhBzpARysKMIYCbPbVuSmVxzchWnD4j4KgrxbcxPs61hCx0H-GoRXd7K_0oiIFq1wIg4YUAEP_66v4VUR3_ajkfABp01qcaJCnIjKHswCiAKb9Ta_tQTbiTb93glCt883z5FmK3T0pGo/https%3A%2F%2Fwww.avast.com%2Fsig-email%3Futm_medium%3Demail%26utm_source%3Dlink%26utm_campaign%3Dsig-email%26utm_content%3Dwebmail > > > <#DAB4FAD8-2DD7-40BB-A1B8-4E2AA1F9FDF2> > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > > https://secure-web.cisco.com/1-GUsUWfilq2QbmuQ1z-hcm1ypTsGXBFaIfcc0hfxzMSLdoMG9mj6JC4Wtu9pYCfJOrR38uuWeK6tdCYeogdaDAnlINKU2kll9o7CoUCHCj3g1dpQWDPt36iecit-pF17FYfsWqK-Ys8oHAcX8i9IowIZ0sn36OUtc0Tbc6bu2FRkWM4jpYSiRSRDQuVN5fQQvgd5RBPs-T2yN6uT5WOIXV0j7TCdv5Nawu-ps1-u_Lr8IgcwcbK9ZF8Qdd5ZWwvnLqnyaRybzZP6xGHr7usUF_-7NUTT1OJx6OaEjD9Y99984YMUDWYJkuwKy7SfixwD/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
