On 10/26/2016 06:21 AM, Michael Lawrence wrote:
There is only one general method for this case, on Vector,missing, so
it's consistent by definition. Note that ignoreSelf and
ignoreRedundant are defunct (and maybe even removed now).
Yep, defunct in release. Just removed them now in devel (IRange
Hi Dario,
The situation for a GenomicRanges object is no different from the
situation for a IRanges object. In both case, when subject is missing,
the findOverlaps,Vector,missing method is called. This method accepts
the 'drop.self' and 'drop.redundant' arguments thru the ellipsis:
> selectMetho
There is only one general method for this case, on Vector,missing, so
it's consistent by definition. Note that ignoreSelf and
ignoreRedundant are defunct (and maybe even removed now). The new
argument names are drop.self and drop.redundant.
Michael
On Wed, Oct 26, 2016 at 3:00 AM, Dario Strbenac
Good day,
For an IRanges object, findOverlaps has ignoreSelf and ignoreRedundant options.
However, these aren't available for a GenomicRanges input object, even though
the subject parameter is optional and a query GRanges object can be overlapped
with itself. Could this be changed to be consist
