On 10/26/2016 06:21 AM, Michael Lawrence wrote:
There is only one general method for this case, on Vector,missing, so
it's consistent by definition. Note that ignoreSelf and
ignoreRedundant are defunct (and maybe even removed now).
Yep, defunct in release. Just removed them now in devel (IRanges 2.9.1).
H.
The new
argument names are drop.self and drop.redundant.
Michael
On Wed, Oct 26, 2016 at 3:00 AM, Dario Strbenac
<dstr7...@uni.sydney.edu.au> wrote:
Good day,
For an IRanges object, findOverlaps has ignoreSelf and ignoreRedundant options.
However, these aren't available for a GenomicRanges input object, even though
the subject parameter is optional and a query GRanges object can be overlapped
with itself. Could this be changed to be consistent?
--------------------------------------
Dario Strbenac
University of Sydney
Camperdown NSW 2050
Australia
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Hervé Pagès
Program in Computational Biology
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