Re: [Bioc-devel] Bioconductor time out in Windows while building vignettes

2021-06-11 Thread Nuno Agostinho
ll still be able to > somehow make some sense of this information. > > Best, > H. > > > On 09/06/2021 07:35, Nuno Agostinho wrote: >> Hey all, >> I have a Bioconductor package named psichomics >> <https://bioconductor.org/packages/psichomics> th

[Bioc-devel] Bioconductor time out in Windows while building vignettes

2021-06-09 Thread Nuno Agostinho
what is going on? My package hasn't built once for Windows since the new release of Bioconductor 3.13 and I have no idea how to solve this... Any help would be greatly appreciated. Thanks! Best regards, Nuno Agostinho PhD student Nuno Morais Lab [[alternati

Re: [Bioc-devel] Add dockerhub push to github repository

2021-06-03 Thread Nuno Agostinho
t; > - name: Build and push > uses: docker/build-push-action@v2 > with: > push: true > username: ${{ secrets.DOCKER_USERNAME }} > password: ${{ secrets.DOCKER_TOKEN }} > repository: almurphy/scfdev > ta

Re: [Bioc-devel] Add dockerhub push to github repository

2021-06-03 Thread Nuno Agostinho
t status 125 > > Obviously, this may not be down to this but I'm just trying to rule things > out since this was the only change I made to the dockerfile. The docker file > has this added following your dockerfile: > > ## Install scFlow package > # Copy description > W

Re: [Bioc-devel] Add dockerhub push to github repository

2021-06-03 Thread Nuno Agostinho
to GitHub Container Registry, maybe this could help somehow: https://github.com/nuno-agostinho/psichomics/blob/master/.github/workflows/docker.yml <https://github.com/nuno-agostinho/psichomics/blob/master/.github/workflows/docker.yml> I use GitHub releases to release a new package version

[Bioc-devel] Outdated Bioconductor's config.yaml

2020-10-30 Thread Nuno Agostinho
lso like to know if there is a better way to automatically check the R version associated with the current devel version. Thank you! Cheers, Nuno Agostinho [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list http

[Bioc-devel] cTRAP: WARNINGS in package submission

2018-10-09 Thread Nuno Agostinho
Dear all, I am the developer of cTRAP <https://github.com/nuno-agostinho/cTRAP>, a package that I recently submitted for approval to Bioconductor: https://github.com/Bioconductor/Contributions/issues/906 <https://github.com/Bioconductor/Contributions/issues/906>. The package

Re: [Bioc-devel] Access rights to data packages

2018-05-21 Thread Nuno Agostinho
cally and then > send us the tar.gz file. We will take care of updating the package[s] for > you. > > Cheers, > > Lori Shepherd > Bioconductor Core Team > Roswell Park Cancer Institute > Department of Biostatistics & Bioinformatics > Elm & Carlton Street

[Bioc-devel] Access rights to data packages

2018-05-21 Thread Nuno Agostinho
gt;. However, I would also like to have access rights to my Bioconductor data packages (alternativeSplicingEvents.hg19 and alternativeSplicingEvents.hg38). Could you please grant me access to modify those packages? Thank you for your time. Cheers, Nuno Agostinho [[alternative HTML ver

Re: [Bioc-devel] Author names with special characters

2016-10-23 Thread Nuno Agostinho
ile.R > show-utils.R > DelayedArray-class.R > DelayedArray-utils.R > DelayedMatrix-utils.R > cbind-methods.R > DelayedArray-stats.R > HDF5Array-class.R > zzz.R > > > > > On So, 2016-10-23 at 12:14 +0100, N

[Bioc-devel] Author names with special characters

2016-10-23 Thread Nuno Agostinho
did in HDF5Array <https://bioconductor.org/packages/3.5/bioc/html/HDF5Array.html> Both result in Andr Falco. Do you know how I should type the name so it is correctly displayed? Thanks for your time. Best regards, Nuno Agostinho [[alternative HTML ver

[Bioc-devel] Windows build error for outdated Shiny package

2016-09-24 Thread Nuno Agostinho
the package in question is https://github.com/Bioconductor/Contributions/issues/139 I require version 0.14 for some of the features it introduced. What can I do to fix this error? Thanks in advance. Best regards, Nuno Agostinho [[alternati