Re: [Bioc-devel] BiocManager now on CRAN

2018-07-14 Thread Jason Serviss
or biocLite in the vignette, that might cause packages to appear in your gist? Kind Regards, Jason Serviss On 13 Jul 2018, at 23:11, Marcel Ramos mailto:marcel.ramospe...@roswellpark.org>> wrote: biocLite [[alternative HTML version d

Re: [Bioc-devel] Fixing bugs in release version

2018-07-12 Thread Jason Serviss
commit logs in git.bioc? I usually looked at git logs on my local machine with the command "git logs" but the commit ids ( commit 629cb9c4c34b82866c11b14dc2972fedc163c411) are different from those used by Jason ((ce0fb68)). Thank you for this discussion. Eugenia 2018-07-12 16:20 GMT+02:

Re: [Bioc-devel] Fixing bugs in release version

2018-07-12 Thread Jason Serviss
oc and Github, in which case the instructions at https://bioconductor.org/developers/how-to/git/push-to-github-bioc/ might help with keeping them in sync. Mike On Thu, 12 Jul 2018 at 11:53, Jason Serviss mailto:jason.serv...@ki.se>> wrote: Mike, It would appear that the version on Eugenia’s

Re: [Bioc-devel] Fixing bugs in release version

2018-07-12 Thread Jason Serviss
Mike, It would appear that the version on Eugenia’s RELEASE_3_7 branch on her git repo is 1.3.1 (https://github.com/eugeniaeueu/Onassis/commit/def6111f80db3ed03a991416ce724425d2027d01) so why is it 1.2.1 on the Bioconductor repo? p.s. have recently been struggling with a similar issue so, jus

Re: [Bioc-devel] ClusterSignificance version number

2018-07-10 Thread Jason Serviss
ontrib/ClusterSignificance_1.9.0.tar.gz Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Bioc-devel mailto:bioc-devel-boun...@r-project.org>> on beh

[Bioc-devel] ClusterSignificance version number

2018-07-10 Thread Jason Serviss
to fix this or if there is just some sort of misunderstanding on my part? Kind Regards, Jason Serviss [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel

Re: [Bioc-devel] Maintainers submit your SSH public keys

2017-07-13 Thread Jason Serviss
Hello, What exactly is ment with “Github id”? My Github username? Kind Regards, Jason On 12 Jul 2017, at 18:16, Turaga, Nitesh mailto:nitesh.tur...@roswellpark.org>> wrote: Hi Samuel, This is a great question. You are not required to create a Github repository for your package. But, if y

Re: [Bioc-devel] building packages that depend on openssl (was Re: problems linking to Rhtslib on Mac OSX)

2016-05-24 Thread Jason Serviss
riginal Message - >> From: "Jason Serviss" >> To: "Dan Tenenbaum" >> Cc: "Aaron Lun" , "bioc-devel" >> Sent: Tuesday, May 24, 2016 11:32:17 AM >> Subject: Re: [Bioc-devel] problems linking to Rhtslib on Mac OSX > >> D

Re: [Bioc-devel] problems linking to Rhtslib on Mac OSX

2016-05-24 Thread Jason Serviss
arning. I also tried reinstalling the previous version of Xcode and command line tools, thinking as mentioned previously that the problem could lie there, but to no avail. Jason On 24 May 2016, at 19:48, Dan Tenenbaum mailto:dtene...@fredhutch.org>> wrote: - Original Message -

Re: [Bioc-devel] problems linking to Rhtslib on Mac OSX

2016-05-24 Thread Jason Serviss
locale: [1] en_GB.UTF-8/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] tools_3.4.0 Kind Regards, Jason Serviss > On 24 May 2016, at 17:06, Aaron