Lori, Thanks for your quick response! Ok, it was the fact that https://git.bioconductor.org/packages/ClusterSignificance is devel by default that was not clear to me (potentially obvious in hindsight). Thanks for clearing this up!
Kind Regards, Jason On 10 Jul 2018, at 11:41, Shepherd, Lori <lori.sheph...@roswellpark.org<mailto:lori.sheph...@roswellpark.org>> wrote: There is no problem with the versions. The master branch is the devel branch - and the DESCRIPTION on our git server is 1.9.0 The RELEASE_3_7 branch is the release 3.7 branch - and the DESCRIPTION on our git serve is 1.8.0 When you clone the repository git clone https://git.bioconductor.org/packages/ClusterSignificance By default you are in the master (devel) branch. So it would show the description as 1.9.0 unless you checkout the release branch. See: http://bioconductor.org/developers/how-to/git/bug-fix-in-release-and-devel/ Your downloaded tar was from release (hence the 3.7/bioc and the 1.8.0 version) https://master.bioconductor.org/packages/3.7/bioc/src/contrib/ClusterSignificance_1.8.0.tar.gz The devel tar that shows 1.9.0 would be from 3.8 https://master.bioconductor.org/packages/3.8/bioc/src/contrib/ClusterSignificance_1.9.0.tar.gz Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org<mailto:bioc-devel-boun...@r-project.org>> on behalf of Jason Serviss <jason.serv...@ki.se<mailto:jason.serv...@ki.se>> Sent: Tuesday, July 10, 2018 5:06:59 AM To: bioc-devel Subject: [Bioc-devel] ClusterSignificance version number Hello, I maintain the ClusterSignificance package which recently encountered a build fail. While investigating the problem I noticed that it would seem that there is an issue with the version numbering (quite possibly my fault). Both the master and RELEASE_3_7 branches were bumped to version 1.9.0 on April 30th although it would seem, per Bioconductor convention, that the RELEASE_3_7 branch should have version 1.8.0. Cloning from the git repo (git clone https://git.bioconductor.org/packages/ClusterSignificance), the DESCRIPTION file shows version 1.9.0 but if I download the Source Package (ClusterSignificance_1.8.0.tar.gz<https://master.bioconductor.org/packages/3.7/bioc/src/contrib/ClusterSignificance_1.8.0.tar.gz>) version 1.8.0 is listed in the DESCRIPTION file. Could someone from Bioconductor please have a look at this and let me know if/what steps I need to take to fix this or if there is just some sort of misunderstanding on my part? Kind Regards, Jason Serviss [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org<mailto:Bioc-devel@r-project.org> mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
