Re: [Bioc-devel] BayesSpace maintainership

It looks like it's associated with a previous work email that I no longer have access to: ez...@fredhutch.org. My github ID is https://github.com/edward130603/. Thanks! Edward On Wed, Oct 23, 2024 at 4:19 AM CoreTeam Bioconductor < bioconductorcoret...@gmail.com> wrote: > We will need to create

Re: [Bioc-devel] Guidance on Creating an Annotation Package for Heterorhabditis bacteriophora

As I already noted on the support site, you need to use makeOrgPackage, which has a help page, and a vignette https://bioconductor.org/packages/release/bioc/vignettes/AnnotationForge/inst/doc/MakingNewOrganismPackages.html -Original Message- From: Bioc-devel On Behalf Of KABILAN S Sent:

[Bioc-devel] Guidance on Creating an Annotation Package for Heterorhabditis bacteriophora

Dear Bioconductor Team, I have the annotation data for the organism Heterorhabditis bacteriophora in an Excel format, and I would like to publish it as an annotation package. Previously, I attempted to use the AnnotationForge package to create an annotation package for this organism based on NCB

[Bioc-devel] BayesSpace maintainership

Hi, Could I please transfer maintainership of BayesSpace to Edward Zhao (cc'ed)? Thank you! Matt [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org maili

Re: [Bioc-devel] BayesSpace maintainership

We will need to create a BiocChedentials account for edward130...@gmail.com? Edward do you have a BIocCredentials account with a different email address? Also do you have a github id you would like associated? On Tue, Oct 22, 2024 at 3:31 PM Matthew Stone wrote: > Hi, > > Could I please transfe

[Bioc-devel] Error on palomino8

Dear Bioc team, my package check fails on palomino8 only and I'm not sure how to approach it. Looks like the unit test task gets killed (or segfaults) - but unfortunately no usable message is shown. It migh

Re: [Bioc-devel] ANCOMBC Package Error on Kunpeng2 Platform

Thanks very much! Oleksii On Wed, 23 Oct 2024 at 10:52, Martin Grigorov wrote: > Hi Oleksii, > > On Wed, Oct 23, 2024 at 9:47 AM Oleksii Nikolaienko < > oleksii.nikolaie...@gmail.com> wrote: > >> Hi Martin, >> could you please also install libz-dev or zlib1g-dev (not sure which one >> is needed

Re: [Bioc-devel] ANCOMBC Package Error on Kunpeng2 Platform

Hi Oleksii, On Wed, Oct 23, 2024 at 9:47 AM Oleksii Nikolaienko < oleksii.nikolaie...@gmail.com> wrote: > Hi Martin, > could you please also install libz-dev or zlib1g-dev (not sure which one > is needed)? - > https://bioconductor.org/checkResults/devel/bioc-LATEST/epialleleR/kunpeng2-install.ht

Re: [Bioc-devel] Kunpeng2 compilation error -lopenblas

Wonderful, thanks for confirming Martin. Best wishes Mike From: Martin Grigorov Date: Wednesday, 23 October 2024 at 09:42 To: Morgan, Michael Cc: bioc-devel@r-project.org Subject: Re: [Bioc-devel] Kunpeng2 compilation error -lopenblas You don't often get email from martin.grigo...@gmail.com. L

Re: [Bioc-devel] Kunpeng2 compilation error -lopenblas

Hi, This issue has been fixed earlier today. It should be OK in the next build (tomorrow). Regards, Martin On Wed, Oct 23, 2024 at 11:28 AM Morgan, Michael via Bioc-devel < bioc-devel@r-project.org> wrote: > Hi Bioc team, > I’m the maintainer of miloR. I have a build compilation error on kunpen

[Bioc-devel] arrow dependent packages fail to build on macOS

Hello, I have made updates to my package BayesSpace on the devel branch and it shows an error on macOS only due to an error with the arrow dependency: unable to load shared object '/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/arrow/libs/arrow.so': dlopen(/Library/Framewor

[Bioc-devel] Kunpeng2 compilation error -lopenblas

Hi Bioc team, I�m the maintainer of miloR. I have a build compilation error on kunpeng2 on Bioc 3.20 related to missing openblas: g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-4.4.1/lib -L/usr/local/lib -o miloR.so RcppExports.o computeMatrices.o fitGeneticPLGlmm.o fitPLGlmm.o inference.o inve