Re: [Bioc-devel] Question reg devtools in MacOS High Sierra

Thank you very much Martin, that was very helpful ! I had failed to catch that. When I ran "brew install openssl", it was already present in my mac, but I had to run install.packages("openssl") again for it to work. In case this is helpful to anyone, here is a full list of things I did to get t

Re: [Bioc-devel] Question reg devtools in MacOS High Sierra

The error says unable to load shared object '/Library/Frameworks/R.framework/Versions/4.1/Resources/library/openssl/libs/openssl.so': so it's having trouble loading the openssl R package. There are installation instructions for this package at https://github.com/jeroen/openssl#readme (I fo

Re: [Bioc-devel] Question reg devtools in MacOS High Sierra

Hi Nitesh, Thanks for your reply. I managed to get libgit2 installed. But having trouble with its other dependencies - ‘gert’ Please see attached txt which is a full information of the error. Do you have an installation of R 4.1 that is more stable where devtools is working ? If yes, are you ab

Re: [Bioc-devel] Question reg devtools in MacOS High Sierra

Hi, Could you provide more information about the error you face with `brew install libgit2` ?? Without knowing what error message you see, it's hard to speculate about why devtools or gert didn’t work. Best, On 2/11/21, 12:00 AM, "Bioc-devel on behalf of Krithika Bhuvaneshwar" wrote:

Re: [Bioc-devel] EWCE Bioconductor package

I can help with git push access as needed once your package is resubmitted, if there are any issues with access rights. Best, Nitesh On 2/11/21, 10:01 AM, "Bioc-devel on behalf of Vincent Carey" wrote: Please disregard my note. As Lori has indicated formal review must proceed bef

[Bioc-devel] Problem of vignette building on Windows

Dear community, I have this error when my package is building on the Windows server by the bot, but I am not sure if the error comes from my package or from the package MiKTeX on Windows server : ! ERROR: Windows API error 5: Access is denied. ! ERROR: Info: path="cprogramdatamiktex2.9mikte

[Bioc-devel] [CANCEL AND REPLACE] : Problem of vignette building on Windows

Dear community, I have this error when my package is building on the Windows server by the bot, but I am not sure if the error comes from my package or from the package MiKTeX on Windows server : ! ERROR: Windows API error 5: Access is denied. ! ERROR: Info: path="cprogramdatamiktex2.9mikt

[Bioc-devel] Problem of vignette building on Windows

Dear community, I have this error when my package is building on the Windows server by the bot, but I am not sure if the error comes from my package or from the package MiKTeX on Windows server : ``` ! ERROR: Windows API error 5: Access is denied. ! ERROR: Info: path="cprogramdatamiktex2.9mi

Re: [Bioc-devel] EWCE Bioconductor package

EWCE may need to be reviewed for reinclusion. I tried to check on R-devel with the repo you mentioned. Do you have a current personal repo that passes check with Bioc 3.13/R-devel? Quitting from lines 220-223 (EWCE.Rmd) Error: processing vignette 'EWCE.Rmd' failed with diagnostics: Invalid attri

Re: [Bioc-devel] EWCE Bioconductor package

Please disregard my note. As Lori has indicated formal review must proceed before reinclusion. On Thu, Feb 11, 2021 at 9:51 AM Vincent Carey wrote: > EWCE may need to be reviewed for reinclusion. I tried to check on R-devel > with the repo you mentioned. Do you > have a current personal repo

Re: [Bioc-devel] EWCE Bioconductor package

When a package is defuncted and removed from Bioconductor, push access is no longer granted. The package has been out of Bioconductor for several releases and will have to be re-submitted and undergo a formal review through the submission tracker. github.com/Bioconductor/Contributions/issues A

[Bioc-devel] EWCE Bioconductor package

Hi all, My apologies in advance if this is not the correct mailing list for this question, regarding development to the EWCE Bioconductor package. I work as part of Dr. Nathan Skene's group who submitted the package EWCE to

Re: [Bioc-devel] How to integrate code from a package not available on bioconductor

This question is actually pretty complicated and involves matters of copyright and academic credit, which are two different things. In general you cannot take code from the internet and republish it under your own name. It sounds like you want to include something substantial (as opposed to say a